DRSC/TRiP Functional Genomics Resources

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Protein Alignment bai and tmed-3

DIOPT Version :10

Sequence 1:NP_651323.3 Gene:bai / 42996 FlyBaseID:FBgn0045866 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_491892.1 Gene:tmed-3 / 172372 WormBaseID:WBGene00019003 Length:203 Species:Caenorhabditis elegans


Alignment Length:202 Identity:43/202 - (21%)
Similarity:83/202 - (41%) Gaps:12/202 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IVCLLMACAWSSHAVMFKLSPNTQKCLKEDIQANQLVMGEFEVSDVPGQIIDYIARDTKGHILSQ 71
            ||..::.....|..:.|:|..|..:|..||::.:...:.||:|.......:|.|..|..|.:|.:
 Worm     6 IVSSILVALGLSIELTFELPDNANQCFYEDLKKDVDTVFEFQVVTGGHYDVDLIIEDPNGKVLYK 70

  Fly    72 KEHITKGKFSFMSEVYDTYEICFISKVPAHQRGVI-QEVSLLTKKGVETKSYEGIGEASKLKPLE 135
            .........:|.:||..||:.||.::.......:: .:.....:..:.....:|....::|:...
 Worm    71 DTKKQYDSINFKAEVEGTYKACFSNEFSTFSHKIVYMDWQFGDQNALHAAVTQGAHAMTQLENYA 135

  Fly   136 V----DLKRLEDLSDSIVRDFVLMRKREEEMRDTNEKTNSRVLFFSIFSMCCLLGLATWQVLYLR 196
            |    .|:.::|....       .|.||...|...|:.|.||:.:|:.....::.:...||..|:
 Worm   136 VAIGDKLRTIDDYQTH-------HRLREATGRKRAEELNERVMIWSLGQSAVVVFIGIGQVFLLK 193

  Fly   197 RYFKAKK 203
            .:|..|:
 Worm   194 SFFNDKR 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
baiNP_651323.3 EMP24_GP25L 20..200 CDD:426051 38/184 (21%)
tmed-3NP_491892.1 EMP24_GP25L 19..197 CDD:426051 38/184 (21%)

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