DRSC/TRiP Functional Genomics Resources

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Protein Alignment bai and TMED1

DIOPT Version :10

Sequence 1:NP_651323.3 Gene:bai / 42996 FlyBaseID:FBgn0045866 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_006849.1 Gene:TMED1 / 11018 HGNCID:17291 Length:227 Species:Homo sapiens


Alignment Length:201 Identity:46/201 - (22%)
Similarity:85/201 - (42%) Gaps:33/201 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 FKLSPNTQKCLKEDIQANQLVMGEFEVSDVPGQIIDYIARDTKGHILSQKEHITKGKFSFMSEVY 87
            |.|....::|..:...||..:..|::|....|..:|:.....:|.:|..:.....|..:......
Human    36 FLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEA 100

  Fly    88 DTYEICFISKVPAHQRGVIQEVSLLTKKGV----------ETKSYEGIGEASKLKPLEVDLKRLE 142
            ..|::||.:           ..|.:::|.|          :.:..||..||  ::|.|:...::|
Human   101 GDYKLCFDN-----------SFSTISEKLVFFELIFDSLQDDEEVEGWAEA--VEPEEMLDVKME 152

  Fly   143 DLSDSI----------VRDFVLMRKREEEMRDTNEKTNSRVLFFSIFSMCCLLGLATWQVLYLRR 197
            |:.:||          ::...|:|..|...|:..|....||.|:|..::..||.:|..||..|:|
Human   153 DIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKR 217

  Fly   198 YFKAKK 203
            :|:.|:
Human   218 FFQDKR 223

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
baiNP_651323.3 EMP24_GP25L 20..200 CDD:426051 44/196 (22%)
TMED1NP_006849.1 EMP24_GP25L 33..220 CDD:426051 44/196 (22%)
COPI vesicle coat-binding. /evidence=ECO:0000255 218..227 2/6 (33%)