back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment bai and Tmed4

DIOPT Version :9

Sequence 1:	NP_651323.3	Gene:	bai / 42996	FlyBaseID:	FBgn0045866	Length:	206	Species:	Drosophila melanogaster
Sequence 2:	NP_598781.1	Gene:	Tmed4 / 103694	MGIID:	1915070	Length:	227	Species:	Mus musculus

Alignment Length:	219	Identity:	58/219 - (26%)
Similarity:	105/219 - (47%)	Gaps:	17/219 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MARAAFIVCLLMACAWSSHAVMFKLSPNTQKCLKEDIQANQLVMGEFE-----------VSDVPG 54
            |.|...:|  |..||..:..:.|.:....::|..|:|....:|:|.:.           :...||
Mouse    12 MVRFGLLV--LTVCAACARGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPG 74

  Fly    55 QIIDYIARDTKGHILSQKEHITKGKFSFMSEVYDTYEICFIS---KVPAHQRGVIQEVSLLTKKG 116
            ..:....:|..|.::..:::.::|:|:|.|.....::||..|   ::.....|.:: |.|..:.|
Mouse    75 LGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLR-VHLDIQVG 138

  Fly   117 VETKSYEGIGEASKLKPLEVDLKRLEDLSDSIVRDFVLMRKREEEMRDTNEKTNSRVLFFSIFSM 181
            ....:|..|....||..|::..::|.|..:.|.::....|.|||..|.|:|.||.|||::||...
Mouse   139 EHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQT 203

  Fly   182 CCLLGLATWQVLYLRRYFKAKKLI 205
            ..|:....||:.:|:.:|:||||:
Mouse   204 VILILTGIWQMRHLKSFFEAKKLV 227

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.