DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ythdf and ECT4

DIOPT Version :9

Sequence 1:NP_001262943.1 Gene:Ythdf / 42995 FlyBaseID:FBgn0039261 Length:700 Species:Drosophila melanogaster
Sequence 2:NP_001321789.1 Gene:ECT4 / 841997 AraportID:AT1G55500 Length:605 Species:Arabidopsis thaliana


Alignment Length:448 Identity:146/448 - (32%)
Similarity:203/448 - (45%) Gaps:89/448 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 ASQPAKL-TSRAASTTSNSKKKGPGMPPPPMVPGKHNLDVNVWDLPNNKPPPVPSPPSP------ 209
            ||..:|| |::||::.|....||                      .|...|..|...|.      
plant   165 ASTQSKLSTNKAANSASAGIPKG----------------------MNGSAPVKPLNQSALYGNSA 207

  Fly   210 ----IDLGYSDLSSDFSISSNTAPPLGARAEKVHKDTENFLKYEHKGLGNNNNFSRAKVSPTGPV 270
                :..||.|....:.         |........|..||...:....|:....|.:|.:...|.
plant   208 LGGGLAAGYQDPRYSYD---------GFYTPVSWHDGSNFSDVQRSVSGSGVASSYSKANNNVPA 263

  Fly   271 RRNLGPQQPVHHAAP-RPATNAG--------------PFGPPNARRHDG-----GPHPSRNSER- 314
            .||.......|:.:. :||:..|              .:|...:....|     ..:.||.:|| 
plant   264 TRNQNSSSNSHYTSMYQPASMTGYAAQGYYDRVSPNKSYGQYGSTVRSGMGYGSSGYGSRTNERG 328

  Fly   315 ----SGNYSSFRG---SEFESASKFEYRDE-NQSRPVEATSATEELPVDSQLVLDELKDKNNYNP 371
                ...|.| ||   |.|......:..:| |:....:.|.||||  |.|:.|..:..|::|...
plant   329 WLNTDNKYRS-RGRGNSYFYGNENIDGLNELNRGPRAKGTKATEE--VSSEEVKKQTFDESNTEE 390

  Fly   372 KVL----DLKKAG---------SARFFVIKSYSEDDIHRSIKYEIWCSTDHGNKRLDDAFKERHE 423
            .|.    |.::..         .|:||:||||||||:|:||||.:|.||.:|||:||.|::|..:
plant   391 TVTCVLPDREECNRDDFPVEYKDAKFFIIKSYSEDDVHKSIKYNVWASTPNGNKKLDAAYQEAQQ 455

  Fly   424 E--GGNIMLFFSVNGSGHFCGMAQMMTPVDYNSTSSVWSQDKWRGKFKVKWIYVKDVPNGTLRHI 486
            :  |..:.||||||.||.|.|:|:|..|||:|.....|.||||.|.|.:||..:|||||..|:||
plant   456 KSSGCPVFLFFSVNASGQFIGLAEMKGPVDFNKNIEYWQQDKWTGSFPLKWHILKDVPNSLLKHI 520

  Fly   487 RLENNENKSVTNSRDTQEVPNDKGIEVLQILHSYNHSTSIFDDFFHYEKKQEEEVSSK 544
            .||.||||.||||||||||..::|::|::|...:|..|.|.|||..||.:|:..:..|
plant   521 TLEYNENKPVTNSRDTQEVKLEQGLKVVKIFKEHNSKTCILDDFSFYEARQKTILEKK 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YthdfNP_001262943.1 YTH 382..518 CDD:309322 79/137 (58%)
ECT4NP_001321789.1 IFT43 361..>407 CDD:317678 12/47 (26%)
YTH 414..552 CDD:309322 79/137 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 176 1.000 Domainoid score I1083
eggNOG 1 0.900 - - E1_KOG1901
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000639
OrthoInspector 1 1.000 - - otm2739
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12357
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X383
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.870

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