DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ythdf and ythdf1

DIOPT Version :9

Sequence 1:NP_001262943.1 Gene:Ythdf / 42995 FlyBaseID:FBgn0039261 Length:700 Species:Drosophila melanogaster
Sequence 2:XP_031749876.1 Gene:ythdf1 / 395029 XenbaseID:XB-GENE-5943530 Length:578 Species:Xenopus tropicalis


Alignment Length:671 Identity:218/671 - (32%)
Similarity:288/671 - (42%) Gaps:228/671 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 GVDQMKIP----GNTAKSVEERNIPWSQQVDEASYENL----SSPTHDEVSGNDNSMQFQYP--- 56
            |.|....|    .|...||:...:.....|.:..:|..    |:.::...|..|..:...||   
 Frog    13 GQDSKVFPLGRSNNDLISVQNGTLHQKDSVHDNDFEQYLSGQSNQSNSYPSMTDPYLSSYYPPSI 77

  Fly    57 --PFNFKENCNTPWNNMNK---------GRKANAN----HDSYRRHGHSIPNNTRRDEHQVN--- 103
              |::..|   .||:....         |:.:|.:    ||:.......:.||..  :|:.|   
 Frog    78 GFPYSLSE---APWSTGGDPPIPYLTPYGQLSNGDHHFMHDAVFGQPGGLGNNIY--QHRFNFFP 137

  Fly   104 ------PWNSRKPAAQSFRNE------NDQPS----TKLDNRTSDEAQNQEVVAAP--------- 143
                  .|.:.....|..:|.      :..||    |.:|.:|.  ..|:.:..||         
 Frog   138 ENPAFSAWGTSGSQGQQTQNSAYGGSYSYPPSSLGGTIVDGQTG--FHNETLNKAPGMNSIEQGM 200

  Fly   144 -------------------------------------------KKTTWASIASQPAKLTSRAAST 165
                                                       |.|:||:|||:|||...:|   
 Frog   201 VGLKIGSNVTASAVKTVGSVVNSVGMPSALSGNGGTSISMPPSKPTSWAAIASKPAKPQPKA--- 262

  Fly   166 TSNSKKK-----GPGMPPPPMVPGKHNLDVNVWD---------------LPNNKPPPVPSPPSPI 210
                |.|     |..:||||:   |||:|:..||               .|.:.|||.|....||
 Frog   263 ----KTKPVTIIGGALPPPPI---KHNMDIGTWDNKGPVAKPPMPQQIPSPQSMPPPQPQLLQPI 320

  Fly   211 DLGYSDLSSDFSISSNTAPPLGARAEKVHKDTENFLKYEHKGLGNNNNFSRAKVSPTGPVRRNLG 275
            ..              ..||:..            ..|:               :|..|.::   
 Frog   321 PA--------------QPPPMSQ------------TPYQ---------------NPPPPQQQ--- 341

  Fly   276 PQQPVHH-AAPRPATNA-GPFGPPNARRHDGGPHPSRNSERSGNYSSFRGSEFESASKFEYRDEN 338
            ||.|.:. .|||....| |..|.|     ||.|              ..|::..||      ..|
 Frog   342 PQAPQNRWVAPRNRNAAYGQGGGP-----DGNP--------------LGGAQSHSA------PGN 381

  Fly   339 QSRPVEATSATEELPVDSQLVLDELKDKNNYNPKVLD--LKKAGSARFFVIKSYSEDDIHRSIKY 401
            :|.|                ||::||..::||||..|  ||   :.|.|:|||||||||||||||
 Frog   382 ESHP----------------VLEKLKAAHSYNPKDFDWNLK---NGRVFIIKSYSEDDIHRSIKY 427

  Fly   402 EIWCSTDHGNKRLDDAFKERHEEGGNIMLFFSVNGSGHFCGMAQMMTPVDYNSTSSVWSQDKWRG 466
            .|||||:|||||||.||:..:.: |.:.|.|||||||||||:|:|.:||||.:::.|||||||:|
 Frog   428 SIWCSTEHGNKRLDSAFRSMNGK-GPVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKG 491

  Fly   467 KFKVKWIYVKDVPNGTLRHIRLENNENKSVTNSRDTQEVPNDKGIEVLQILHSYNHSTSIFDDFF 531
            ||.|||::||||||..|||||||||:||.|||||||||||.:|...||:|:.:|.|:|||||||.
 Frog   492 KFDVKWLFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKLVLKIIATYKHTTSIFDDFS 556

  Fly   532 HYEKKQEEEVSSKRPPMHGPD 552
            ||||:|||| ...|..|..||
 Frog   557 HYEKRQEEE-EVVRKVMAKPD 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YthdfNP_001262943.1 YTH 382..518 CDD:309322 95/135 (70%)
ythdf1XP_031749876.1 YTH 409..542 CDD:398013 94/133 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 208 1.000 Domainoid score I2802
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 278 1.000 Inparanoid score I2858
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000639
OrthoInspector 1 1.000 - - otm48549
Panther 1 1.100 - - LDO PTHR12357
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X383
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.060

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