DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ythdf and Ythdf2

DIOPT Version :10

Sequence 1:NP_651322.1 Gene:Ythdf / 42995 FlyBaseID:FBgn0039261 Length:700 Species:Drosophila melanogaster
Sequence 2:XP_038965726.1 Gene:Ythdf2 / 313053 RGDID:1311321 Length:595 Species:Rattus norvegicus


Alignment Length:413 Identity:176/413 - (42%)
Similarity:224/413 - (54%) Gaps:78/413 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 VAAPKKTTWASIASQPAKLTSRAASTTSNSKKKGPGMPPPPMVPGKHNLDVNVWDLPNNKPPPVP 204
            :|.||..:||.|||:|||...:..:....:   |..:||||:   |||:|:..||   ||.|...
  Rat   231 IAPPKPASWADIASKPAKQQPKLKTKNGIA---GSSLPPPPI---KHNMDIGTWD---NKGPVAK 286

  Fly   205 SPPSPIDLGYSDLSSDFSISSNTAPPLGARAEKVHKDTENFLKYEHKGLGNNNNFSRAKVSPTGP 269
            :|..             ::..|...|.....:.|.:...|........:|....    .:.|..|
  Rat   287 APSQ-------------ALVQNIGQPTQGSPQPVGQQANNSPPVTQTSVGQQTQ----PLPPPPP 334

  Fly   270 VRRNLGPQ----QPVHHAAPRPATNAGP-FGPPNARRHDGGPHPSRNSERSGNYSSFRGSEFESA 329
            ....|..|    ||....|||   |.|. ||      |:|.........::|:.|:         
  Rat   335 QPAQLSVQQQAAQPTRWVAPR---NRGSGFG------HNGVDGNGVGQSQAGSGST--------- 381

  Fly   330 SKFEYRDENQSRPVEATSATEELPVDSQLVLDELKDKNNYNPKVLD--LKKAGSARFFVIKSYSE 392
                                   |.:...||::|:..||||||..|  ||   ..|.|:||||||
  Rat   382 -----------------------PSEPHPVLEKLRSINNYNPKDFDWNLK---HGRVFIIKSYSE 420

  Fly   393 DDIHRSIKYEIWCSTDHGNKRLDDAFKERHEEGGNIMLFFSVNGSGHFCGMAQMMTPVDYNSTSS 457
            |||||||||.|||||:|||||||.|::..:.: |.:.|.|||||||||||:|:|.:.||||:.:.
  Rat   421 DDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGK-GPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAG 484

  Fly   458 VWSQDKWRGKFKVKWIYVKDVPNGTLRHIRLENNENKSVTNSRDTQEVPNDKGIEVLQILHSYNH 522
            |||||||:|:|.|:||:||||||..||||||||||||.|||||||||||.:|..:||:|:.||.|
  Rat   485 VWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKH 549

  Fly   523 STSIFDDFFHYEKKQEEEVSSKR 545
            :|||||||.||||:||||.|.||
  Rat   550 TTSIFDDFSHYEKRQEEEESVKR 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YthdfNP_651322.1 YTH 382..518 CDD:461195 94/135 (70%)
Ythdf2XP_038965726.1 YTH 411..544 CDD:461195 93/133 (70%)

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