DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ythdf and Ythdc1

DIOPT Version :9

Sequence 1:NP_001262943.1 Gene:Ythdf / 42995 FlyBaseID:FBgn0039261 Length:700 Species:Drosophila melanogaster
Sequence 2:XP_006534926.1 Gene:Ythdc1 / 231386 MGIID:2443713 Length:748 Species:Mus musculus


Alignment Length:782 Identity:159/782 - (20%)
Similarity:272/782 - (34%) Gaps:229/782 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 PWNNMNKGRKANANHDSYRRHGHSIPNNTRRDEHQVNPWNSR----KPAAQSFRNENDQPSTKLD 127
            |.:..:|..|..:...|.|...    .:|:|.:..:   :||    ||.:.|..|.....|||  
Mouse    45 PESEQDKNEKKGSKRKSERMES----TDTKRQKPSI---HSRQLISKPLSSSVSNNKRIVSTK-- 100

  Fly   128 NRTSDEAQNQEV--------VAAPKKTTWASIA------SQPAKLTSRAASTTSNSKKKGPGMPP 178
            .::..|.:|:|.        :.|.:|...:|.:      |||.|...|...:...:|.       
Mouse   101 GKSVTEYKNEEYQRSERNKRLDADRKIRLSSSSSREPYKSQPEKTCLRKRDSERRAKS------- 158

  Fly   179 PPMVPGKHNLDVNVWDLPNNKPPPVPSPPSPIDLGYSDLSSDFSISSNTAPPLGARA-------- 235
             |...|...:.:.|     ::.....|..|..::...|..||....|:.:...|...        
Mouse   159 -PTPDGSERIGLEV-----DRRASRSSQSSKEEVNSEDYGSDHETGSSGSSEQGNNTENEEEGGE 217

  Fly   236 ------EKVHKDTEN---------------------------FLKYE-----HKGLGNNNNFSRA 262
                  |:|.:|.|:                           ..:||     .|..||:.: :|:
Mouse   218 EDVEEDEEVDEDAEDDEEVDEDAEEEEEEDEEEEEDEDEDEEEEEYEQDERDQKEEGNDYD-TRS 281

  Fly   263 KVSPTGPVRRNLGPQQPVHHAAPRPATNAGPFG---PPNARRHDGGPHPSRNSERSGNYSSFRGS 324
            :.|.:|        .:.|........:.:|..|   ....|:...|..|. ..:|||:.:|    
Mouse   282 EASDSG--------SESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPI-VFDRSGSSAS---- 333

  Fly   325 EFESASKFEYRDENQSRPVEATSATEELPVDSQLVLDELKDKNNYNPKVLDLKKAGSARFFVIKS 389
              ||.:..|.:.|..|..|.|..                ||:.:....||.     .||||:|||
Mouse   334 --ESYAGSEKKHEKLSSSVRAVR----------------KDQTSKLKYVLQ-----DARFFLIKS 375

  Fly   390 YSEDDIHRSIKYEIWCSTDHGNKRLDDAFKERHEEGGNIMLFFSVNGSGHFCGMAQMMTPVDYNS 454
            .:.:::..:....:|.:.....|:|:.||:...    :::|.|||..||.|.|.|::.:...:..
Mouse   376 NNHENVSLAKAKGVWSTLPVNEKKLNLAFRSAR----SVILIFSVRESGKFQGFARLSSESHHGG 436

  Fly   455 TSSVW------SQDKWRGKFKVKWIYVKDVPNGTLRHIRLENNENKSVTNSRDTQEV-------- 505
            :...|      |.....|.||:.||..:::|.....|:....||:|.|...||.||:        
Mouse   437 SPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL 501

  Fly   506 ----PNDKGIEVLQILHSYNHSTSIFDDFFHYE-----------------KKQEEEV----SSKR 545
                |.|:.|::.|::|...|...:     |.:                 :::.|:.    |.|:
Mouse   502 CLLFPPDESIDLYQLIHKMRHKRRM-----HSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKK 561

  Fly   546 PPMHGPDGNNHAPAPL-------ARSF-----NRQADDKDRDRDGRGGMSQ--KHFNSGGG---- 592
            |.:..|...:..|..:       ..||     ||:.....||....|..:.  :.|::.|.    
Mouse   562 PRIDYPPEFHQRPGYVKDPRYQEVDSFTNLIPNRRFSGVRRDVFLNGSYNDYVREFHNMGPPPPW 626

  Fly   593 ------AGFRNPGH----RGGAGSGGSHNNYSEYRRGFDIHKSSSDYQFKDRDGPDFD-RENDF- 645
                  .|...|.|    :..|....:|..||.:      |....:.:::|:...|:| |.:|| 
Mouse   627 QGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYSGH------HPVPHEARYRDKRVHDYDMRVDDFL 685

  Fly   646 ----------GSHYGSNNRKNEY---KHNNTNKARLKTRDRDFSTEQIKIGVRFKDTDKDKMRSN 697
                      .|.....:|:.|.   :.|..::.|.:.|||:...|      |..|.|:|:....
Mouse   686 RRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERE------RICDRDRDRGERG 744

  Fly   698 EY 699
            .|
Mouse   745 RY 746

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YthdfNP_001262943.1 YTH 382..518 CDD:309322 42/153 (27%)
Ythdc1XP_006534926.1 YTH 368..505 CDD:367840 38/140 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2345
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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