DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smg6 and Smg5

DIOPT Version :9

Sequence 1:NP_651321.1 Gene:Smg6 / 42994 FlyBaseID:FBgn0039260 Length:948 Species:Drosophila melanogaster
Sequence 2:NP_001285914.1 Gene:Smg5 / 34804 FlyBaseID:FBgn0019890 Length:1177 Species:Drosophila melanogaster


Alignment Length:851 Identity:171/851 - (20%)
Similarity:286/851 - (33%) Gaps:243/851 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 NWKNFCYIHDQLQD-AFKQLLLEQL-KFVCEHKVDVFFWKLLFYNVRNYLKRQQTDQAHTHTL-- 249
            ||      |.|.|| |..|..:::| :|:|.             .:.|| ||........:.|  
  Fly   119 NW------HKQCQDAATAQENMQKLERFLCA-------------GIFNY-KRLSARMEEIYDLDL 163

  Fly   250 -LLIEQAI----KFYRMLYDKLMAKCVASSRCDSALKVVAQRL------LICLGDLTRY----RV 299
             .||:.:|    ....|:.|.:.:....:...|.:|:.|:..|      |:.||||.||    |:
  Fly   164 KYLIDFSIISDGYISDMIGDTMESSHSGTHAVDKSLEAVSFALDTIHSSLLSLGDLHRYFLDFRI 228

  Fly   300 NHVKATDYMEAARYYQRAQELVPGNGAPFNQLAVISIYHHKRFDAVYYYVRSLLTSNSIQSAKES 364
            :...:....:.|:||..|.:|.|..|...|||..:....:...|:.|:|:.||:.....:.::.:
  Fly   229 DSKLSISKEQVAKYYLEAFKLNPAIGMAQNQLGTLHYGQNHDLDSTYHYLYSLVCIIPFELSENN 293

  Fly   365 LLDLFDEIRRKYEETEMKQSPMHYAAGSKNQKSKQMRKEVWIYPDGIRRLHRTDDKGNKAKGNKA 429
            |..||                                                            
  Fly   294 LNKLF------------------------------------------------------------ 298

  Fly   430 TMAEVNRY-EEMPPEEILPRIVSLY--LYLLGKL-YTGTDVDSLYPLLRKLQIQIGVALRHENL- 489
              |:...| |.|.||::...|...:  .||:..: :...:|.....|...:.|.:...|..:.| 
  Fly   299 --AKHTEYLERMDPEKLDFNIEDFFARFYLIVDIFFFDKEVPDFNALCHCVLIDLRKILCSQQLR 361

  Fly   490 LSRSKLLKIVALNLFVVEHNKPKTSRREMRYHSFNFA--NSFFGLMMKKTNQLLAGFVEDSTNVQ 552
            :....:.|||::..|.:...|...|.:....|:|..|  :......:....|.:....:|:...|
  Fly   362 VPEPSIFKIVSILFFCLSKLKMINSPKVYSLHAFLVAACSDLMDACIVSIEQTILARAQDNERFQ 426

  Fly   553 CLPEEDFATVNTYL-QFVNVYVRWLSISLDVWEPVRSEE------HSFIDCWAELTILFEYIECL 610
            ...||.|...:|.: :..|.|..||:.   |.|..|.::      ||..||.:         :..
  Fly   427 AEYEERFQEFDTVVRKSRNEYKNWLAA---VGECERKDKKLMPRPHSLKDCSS---------DSR 479

  Fly   611 MGKHKLE--KNEILLDED-----VALRGF---------TPLGRETLSMDYLKRGSERLQFFERVR 659
            ..:|..|  |.:...|.|     |:.|..         |||..::      ||...||:  .|.|
  Fly   480 DSQHSGEEAKTQEAADGDKIGEAVSTRSSDEAKESDLKTPLSCKS------KRRGMRLR--RRRR 536

  Fly   660 RIGQFQEYYVQHQEALQQPLESSFTVEH-----LNAAMKNALENYDA----ESCG----LAANVS 711
            :|.|..:......|:   .|::.|..:.     |::.......:.||    |.||    .|||.|
  Fly   537 KIAQSDDSSCYDSES---ELDTDFYSDEEDYTDLSSNFDTDFSDIDAADPGEPCGEERYAAANYS 598

  Fly   712 KIQCKA--------------------VE----------ELLCRSTDSDVSELCKLKKELEAKARV 746
            |.:.||                    :|          |....|.::|..||.:..:.|:...:.
  Fly   599 KKERKAGGGGGGGVGGVVYSDNEDVVIEEEKIVYPNEVERRSNSQEADSEELLRSFEVLQLNFKS 663

  Fly   747 KQICTSK---------LEDILKFVDTKIYIEVRPRYLLPDTNCFIDCLED---FEKLSTEFKRYT 799
            .:...||         .|...|.|....|.::.|       |..||||.:   ...|...|. :.
  Fly   664 AEDAQSKPVAPPPVSFSEPPKKLVYRNKYTKINP-------NIVIDCLHNEPTIRALKMLFD-WL 720

  Fly   800 LIIPLTVV----KELDGLSKGVKLDSYRSSKQTQRIHHFDE---VSSRAKKSLEFIKSAKGNVKC 857
            .|.|..::    ...:.:.|.:||.:|.:.....|..:|:.   .::..:.||..:...:.||. 
  Fly   721 RINPEILIGCYHSNPEFVHKIMKLLNYCNIDIFTRKVYFERDLLTTANVRDSLVELFDVRANVP- 784

  Fly   858 ATTKGSFVNASVF----------ALVEEEYLSNDDKILATAMAV--------SKTAKTEQCTDGK 904
            .|...:|.|..:|          .::.|.....::.||.....|        .|......|...:
  Fly   785 LTEDFAFKNFDIFQSTQITLDWETIIRERVTPQEESILRIFKMVDFGFFICKQKKFNYRFCVKTR 849

  Fly   905 CFIQTE 910
            .|.:|:
  Fly   850 RFTETQ 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smg6NP_651321.1 EST1 190..298 CDD:287360 31/126 (25%)
EST1_DNA_bind 310..638 CDD:287359 69/357 (19%)
P-loop_NTPase <616..>769 CDD:304359 46/220 (21%)
PIN_Smg6 767..941 CDD:189055 32/172 (19%)
Smg5NP_001285914.1 EST1 99..222 CDD:287360 30/122 (25%)
EST1_DNA_bind 240..478 CDD:287359 59/311 (19%)
PIN_Smg5 1012..1173 CDD:189054
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2162
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR15696
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.000

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