DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smg6 and SPBC2F12.03c

DIOPT Version :9

Sequence 1:NP_651321.1 Gene:Smg6 / 42994 FlyBaseID:FBgn0039260 Length:948 Species:Drosophila melanogaster
Sequence 2:NP_595712.1 Gene:SPBC2F12.03c / 2540346 PomBaseID:SPBC2F12.03c Length:891 Species:Schizosaccharomyces pombe


Alignment Length:600 Identity:109/600 - (18%)
Similarity:177/600 - (29%) Gaps:253/600 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 TSVAGDVNRNGQGQGKNKSGNSARRRGRKDKEHATQSPVTRTRLTTEHPDWFEPLLGL----PHA 167
            |||..|        |..|..:.:|::....|:|.:....|             |:.|:    |..
pombe    42 TSVVVD--------GHKKPRSESRKKYDAKKQHQSSHFAT-------------PVKGVESSEPTE 85

  Fly   168 KNIVHLYDQLMVLNQRNLILI-------NWKNFCYIHDQLQDAFKQLLLEQLKFVCEHKVDVFFW 225
            |            .:||...:       .||....:..::.......:|..:.|..|..|..:.|
pombe    86 K------------KKRNKEALWLRARQKKWKEIFELCQKITSLLGGTILIDVSFSMEKDVLTYLW 138

  Fly   226 KLLFYNVRNYLKRQ--QTDQAHTHTLL---------LIEQAIKFYRML---------------YD 264
            ..:.|.|.::.|.:  :....|...||         .:...|:||..|               ..
pombe   139 MRVHYQVISFFKHRIYEASTQHDPELLSSLVTMHIQYLNSTIQFYTTLIAIIGELYHLQCLSPLT 203

  Fly   265 KLMAKCV-----------------------ASSRC---------DSALKVVA------------- 284
            .....||                       :.||.         ||.|:|.:             
pombe   204 SFFTSCVTPKTILESPLRKQGSHNWKTSTNSQSRLAALFSSIFEDSCLEVDSVKRLLSGSPSSSS 268

  Fly   285 -----------------------QRLLIC-------LGDLTRY--RVNHVKATDYMEAARYYQRA 317
                                   |.|::|       :||:.||  .|......||..:.|||..|
pombe   269 SPLKKDSSSNSLTYEPALTDHKPQYLVLCVYRSLIYIGDVHRYLAEVRSPNVPDYQVSRRYYVMA 333

  Fly   318 QELVPGNGAPFNQLAVISI-----------------------YHHKR----FDAVYYYVRSLLTS 355
            ..:.|..|..|:||.:|.:                       ...||    ..|:.::..|.::.
pombe   334 ANVAPDYGVHFHQLGLIEVADARSSSRKSSSGQSSSLKGNVNVEDKRLIQALPAISFFFLSSISP 398

  Fly   356 NSI--QSAKESLLDLFDEIRRKYEETEMKQSPMHYAAGSKNQKSKQMRKEVWIYPDGIRRLHRTD 418
            |::  .|||.|   ||..::|.:                                      .:|:
pombe   399 NNVAASSAKTS---LFIALKRCF--------------------------------------GKTN 422

  Fly   419 DKGNKAKGNKATMAEVNRYEEMPPEEILPRIVSLYLYLLGKLYTGTDVDSLY---PLLRKLQIQI 480
            |..|....:|.:.|                 :||:|.|....::.||.|.:.   ||.::::..:
pombe   423 DGSNPCLYHKESSA-----------------ISLFLRLYAIAFSNTDADYIQDSGPLFKRVRFLL 470

  Fly   481 GVALRHENLLSRSKLLKIV--ALNLFVVEHNKPKTSRREMRYHSFNFANSFFGLMMKKTNQLLAG 543
            ..:|: ..|.|.|.||::.  ||...|:   .|.....:...|..::.|      :|...|....
pombe   471 SESLK-SGLFSESSLLQMTYCALAARVL---APFIGFSDSGEHGESYPN------LKLATQTTTM 525

  Fly   544 FVE---DSTNVQCLP 555
            |.|   ||.|.| ||
pombe   526 FFEVLSDSVNSQ-LP 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smg6NP_651321.1 EST1 190..298 CDD:287360 32/210 (15%)
EST1_DNA_bind 310..638 CDD:287359 57/282 (20%)
P-loop_NTPase <616..>769 CDD:304359
PIN_Smg6 767..941 CDD:189055
SPBC2F12.03cNP_595712.1 EST1 132..314 CDD:287360 27/181 (15%)
EST1_DNA_bind 326..647 CDD:287359 57/282 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR15696
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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