DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and Nr1h5

DIOPT Version :10

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_003749414.1 Gene:Nr1h5 / 690430 RGDID:1596077 Length:504 Species:Rattus norvegicus


Alignment Length:218 Identity:61/218 - (27%)
Similarity:105/218 - (48%) Gaps:30/218 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQKCRLRKCLDIG 71
            |.||||||.||::||:|||.||.||||:......::|....:|::.:..||.|.:|||:||..:|
  Rat   121 CMVCGDKASGYHYNALTCEGCKGFFRRSITKNAVYSCKNGGHCEMDMYMRRKCPECRLKKCKAVG 185

  Fly    72 MKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHYSGSQD 136
            |.:|.:::|..  .|.:::..:...|..:.:.....|    |..|.|..:.:|.|.    .|:||
  Rat   186 MLAECLLTEIQ--CKSKRLRKSFKHRPTLSSAIQVED----EGTDTKHVSSTSRSG----KGAQD 240

  Fly   137 SQSCGSADS---GANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPD----RASQA----INRL 190
            ..:..:.:.   .....:.|::..|..:::.|.        |..|:|:    |.|:|    .|.|
  Rat   241 DMTLTAEERRLLNTIVTAHRKSMVPVGEISALL--------QEYSNPELSFLRLSEASILHANWL 297

  Fly   191 MRTQKEAISVMEKVISSQKDALR 213
            |:..| .:...|.:.:..:.||:
  Rat   298 MKFTK-GLPGFENLTAEDQTALQ 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 35/90 (39%)
NR_LBD 462..>573 CDD:472173
NR_LBD_F1 523..702 CDD:132727
Nr1h5XP_003749414.1 NR_DBD_FXR 118..201 CDD:143520 35/81 (43%)
NR_LBD 247..496 CDD:472173 16/82 (20%)
Blue background indicates that the domain is not in the aligned region.

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