DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and Nr1i3

DIOPT Version :10

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_063128653.1 Gene:Nr1i3 / 65035 RGDID:621400 Length:420 Species:Rattus norvegicus


Alignment Length:98 Identity:42/98 - (42%)
Similarity:63/98 - (64%) Gaps:0/98 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PKNCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQKCRLRKCL 68
            |:||.||||:|.||:|:|:|||.||.||||.........|||...|:::...||.|..|||:|||
  Rat    51 PRNCVVCGDRATGYHFHALTCEGCKGFFRRTVSKTIGPICPFAGRCEVSKAQRRHCPACRLQKCL 115

  Fly    69 DIGMKSENIMSEEDKLIKRRKIETNRAKRRLME 101
            ::||:.:.|:|.|...::|.:....||::..::
  Rat   116 NVGMRKDMILSAEALALRRARQARRRAQKASLQ 148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 41/92 (45%)
NR_LBD 462..>573 CDD:472173
NR_LBD_F1 523..702 CDD:132727
Nr1i3XP_063128653.1 None
Blue background indicates that the domain is not in the aligned region.

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