DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and Nr1h4

DIOPT Version :9

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_008763482.1 Gene:Nr1h4 / 60351 RGDID:628831 Length:516 Species:Rattus norvegicus


Alignment Length:449 Identity:98/449 - (21%)
Similarity:147/449 - (32%) Gaps:172/449 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQKCRLRKCLDIG 71
            |.||||:|.||::||:|||.||.||||:......:.|....||.:.:..||.||.||||||.::|
  Rat   167 CVVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYKCKNGGNCVMDMYMRRKCQDCRLRKCREMG 231

  Fly    72 MKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHYSGSQD 136
            |.:|.:                                                     |:|...
  Rat   232 MLAECM-----------------------------------------------------YTGLLT 243

  Fly   137 SQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAINRLMRTQKEAISVM 201
            ...|.|                    ..|:...::..||.|:: |...:.:.::..|.|......
  Rat   244 EIQCKS--------------------KRLRKNVKQHADQTVNE-DSEGRDLRQVTSTTKLCREKT 287

  Fly   202 EKVISSQKDALRLVSHLIDYPGDAL-------KIISKFMNSPFNALTVFTKFMSSPTDGVEIISK 259
            |..:..|.        |:||..|:.       :|.:|.:...|:|...|.......|..|:|:  
  Rat   288 ELTVDQQT--------LLDYIMDSYSKQRMPQEITNKILKEEFSAEENFLILTEMATSHVQIL-- 342

  Fly   260 IVDSPADVVEF------MQNLMHSPEDAIDIMNKFMNTPAEAL-----RILNRILSGGGANAAQQ 313
                    |||      .|.|.|  ||.|.::.   .:..||:     .|.|:.|..|.|:..::
  Rat   343 --------VEFTKRLPGFQTLDH--EDQIALLK---GSAVEAMFLRSAEIFNKKLPAGHADLLEE 394

  Fly   314 TADRKPLLDKEPAVKPAAPAERADTVIQSMLGNSPPISPHDAAVDLQYHSP------GVGEQPST 372
            ...:..:.|                                     :|.:|      .|||...|
  Rat   395 RIRKSGISD-------------------------------------EYITPMFSFYKSVGELKMT 422

  Fly   373 SSSHPL--PYIANSPDFD-LKTFMQTNYNDEPSLDSDFSINSIESVLSEVIRIEYQAFN 428
            ...:.|  ..:..|||.. :|.........||.||          ||.::.:| ||..|
  Rat   423 QEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD----------VLQKLCKI-YQPEN 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 35/90 (39%)
NR_LBD 462..>573 CDD:299703
NR_LBD_F1 523..702 CDD:132727
Nr1h4XP_008763482.1 NR_DBD_FXR 164..251 CDD:143520 39/156 (25%)
NR_LBD_Fxr 292..511 CDD:132734 51/250 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351531
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24082
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.940

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