DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and RARG

DIOPT Version :10

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_000957.1 Gene:RARG / 5916 HGNCID:9866 Length:454 Species:Homo sapiens


Alignment Length:430 Identity:103/430 - (23%)
Similarity:163/430 - (37%) Gaps:118/430 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SPP------KNCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQ 60
            |||      |.|.||.||:.||::...:||.||.||||:......:||..::||.|..|||..||
Human    79 SPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQ 143

  Fly    61 KCRLRKCLDIGMKSENIMSEEDKLIKRRKIETNRAKRRLMENGT-DACDADGGEE----RDHKAP 120
            .|||:||.::||..|.:.::.           |:.|:.:.|.|: |:.:.....|    :..||.
Human   144 YCRLQKCFEVGMSKEAVRNDR-----------NKKKKEVKEEGSPDSYELSPQLEELITKVSKAH 197

  Fly   121 ADS--SSSNLDHYSGSQDSQSCGSADSG--------ANGCSGR----QASSPGTQVNPLQMTAEK 171
            .::  |...|..|:.:..:......|.|        |..|..:    ....||       .|...
Human   198 QETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPG-------FTGLS 255

  Fly   172 IVDQIVSDPDRASQAINRLMRTQKEAISVMEKVISSQKDALRLVSHLIDYPGDALKI-ISKFMNS 235
            |.|||..   ..:..::.||      :.:..: .:.::|.:..        .|.|.: .::..|:
Human   256 IADQITL---LKAACLDILM------LRICTR-YTPEQDTMTF--------SDGLTLNRTQMHNA 302

  Fly   236 PFNALT--VFT---KFMSSPTDGVE--IISKIVDSPADVVEFMQNLMHSPEDAIDIMNKFMNTPA 293
            .|..||  ||.   :.:....|..|  ::|.|.....|.::     :..||.    ::|......
Human   303 GFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMD-----LEEPEK----VDKLQEPLL 358

  Fly   294 EALRILNRILSGGGANAAQQTADRKPLLDKEPAVKP-------------AAPAERADTVIQSMLG 345
            ||||:..|              .|:|   .:|.:.|             ...||||.|:...:.|
Human   359 EALRLYAR--------------RRRP---SQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPG 406

  Fly   346 NSPPI------SPHDAAVDLQYHSPGVGEQPSTSSSHPLP 379
            ..||:      :|.....|    |...|..|:.||...:|
Human   407 PMPPLIREMLENPEMFEDD----SSQPGPHPNASSEDEVP 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 36/92 (39%)
NR_LBD 462..>573 CDD:472173
NR_LBD_F1 523..702 CDD:132727
RARGNP_000957.1 Modulating 1..89 3/9 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 58..83 3/3 (100%)
NR_DBD_RAR 85..165 CDD:143522 34/90 (38%)
Hinge 156..184 6/38 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 161..180 5/29 (17%)
NR_LBD_RAR 188..418 CDD:132735 52/280 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 408..454 10/39 (26%)
Blue background indicates that the domain is not in the aligned region.

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