Protein Alignment Hr96 and nr1d4b

DIOPT Version :9

• Sequence 1: NP_524493.1
• Gene: Hr96 / 42993
• FlyBaseID: FBgn0015240
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: NP_001272462.1
• Gene: nr1d4b / 571948
• ZFINID: ZDB-GENE-080403-6
• Length: 576
• Species: Danio rerio
• Alignment Length: 728
• Identity: 129/728 - (17%)
• Similarity: 218/728 - (29%)
• Gaps: 323/728 - (44%)

  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQF-TCPFNQNCDITVVTRRFCQKCRLRKCLDI 70
            |.||||.|.|:::....||.||.||||:......: .|..|:||.|..:.|..||.||.:|||.:
Zfish   119 CKVCGDIASGFHYGVHACEGCKGFFRRSIQQNIHYKMCVKNENCLIMRMNRNRCQHCRFKKCLSV 183

  Fly    71 GMKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHYSGSQ 135
            ||..:        .::..:| ..|.|:||::.                  ..|..::|:. |.|.
Zfish   184 GMSRD--------AVRFGRI-PKREKQRLLDE------------------MQSYMNSLNE-SASM 220

  Fly   136 DSQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAINRLMRTQKEAISV 200
            |.           ||
Zfish   221 DI-----------GC-------------------------------------------------- 224

  Fly   201 MEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTKFMSSPTDGVEIISKIVDSPA 265
                                                    |..|:..|||.||
Zfish   225 ----------------------------------------TTPTETPSSPEDG------------ 237

  Fly   266 DVVEFMQNLMHSPEDAIDIM-----NKFMNTPAEALRILNRILSGGGANAAQQTADRKPLLDKEP 325
                       ..|::|.::     |.|:|  .|.|::                     .:|:|.
Zfish   238 -----------QSEESIGVISQAYRNIFVN--GEKLQV---------------------KVDQEN 268

  Fly   326 AVKPAAPAERADTVIQSMLGNSPPISPHDAAVDLQYHSPGVGEQPSTSSSHPLPYIA---NSPDF 387
            .|.                .|:.|.|       .::|..   ::.....|||.|.|:   :|...
Zfish   269 NVN----------------NNNNPSS-------FRHHPM---QESGYVQSHPQPNISAQEHSVHS 307

  Fly   388 DLKTFMQT-----NYNDEPSLDSDFSINSIESVLSEVIRIEYQAFNSIQQAASRVKEEMSYGTQS 447
            ......|:     |.|::|:              |:|:...:..|......:.......||.|:.
Zfish   308 TTSCLAQSRCPVANQNNKPT--------------SQVLDNGHYNFPQSSSPSQGTTPTQSYPTKH 358

  Fly   448 TYGGCNSAANNSQPHLQQPIC----APSTQQLDRELNEAEQMKLRELRLASEALYDPVDEDLSAL 508
                 ||.:..:|.      |    :|..:.|...||..   .:.....:|:.:::...:..:.
Zfish   359 -----NSYSTQTQS------CPWRLSPGAKVLACPLNAC---PVSSASHSSQQVWESFSQCFTP- 408

  Fly   509 MMGDDRIKPDDTRHNPKLLQLINLTAVAIKRLIKMAKKITAFRDMCQEDQVALLKGGCTEMMIMR 573
                                       |:|.:::.||.|..|:.:.|.|||.|||.|..:::::|
Zfish   409 ---------------------------AVKEVVEFAKSIPGFQALSQHDQVMLLKAGTFQVLMVR 446

  Fly   574 SVMIYDDDRAAWKVPHTKE-------------------NMGNIRTDLLKFAE--GNIYEEHQKFI 617
            ...::          :.||                   .|||:...:.:|:|  |::..|
Zfish   447 FCSLF----------NAKERTVTFLNGQTYPLSYLRVLGMGNLLDAMFEFSEKLGSMGLE----- 496

  Fly   618 TTFDEKWRMDENIILIMCAIVLFTSARSRVIHKDVIRLEQNSYYYLLRRYLESVYSGCEARNAFI 682
                    .||  :.:..|:||.::.||.:.....:...|......||..:  .....|..:.|.
Zfish   497 --------ADE--MALFMAVVLVSADRSGISDMGAVEQLQEDLIGALRALI--TRRKPEDSSLFP 549

  Fly   683 KLIQKISDVERLN 695
            ||..::.|:..||
Zfish   550 KLPLRLPDLRTLN 562

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hr96	NP_524493.1	NR_DBD_CAR	5..98	CDD:143524	33/91 (36%)
		NR_LBD	462..>573	CDD:299703	20/114 (18%)
		NR_LBD_F1	523..702	CDD:132727	41/194 (21%)
nr1d4b	NP_001272462.1	NR_DBD_REV_ERB	115..202	CDD:143540	33/91 (36%)
		NR_LBD	386..574	CDD:299703	42/235 (18%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170593347
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	2.840