DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and rorca

DIOPT Version :9

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001076288.1 Gene:rorca / 559245 ZFINID:ZDB-GENE-990415-250 Length:479 Species:Danio rerio


Alignment Length:738 Identity:140/738 - (18%)
Similarity:236/738 - (31%) Gaps:306/738 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQKCRLRKCLDIG 71
            |.:||||:.|.::..:|||.||.||||:......::|...:||.|....|..||.|||:|||.:|
Zfish    10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCIIDRTNRNRCQHCRLQKCLALG 74

  Fly    72 MKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHYSGSQD 136
            |..:.:           |......|:|      |:..|:..:.:..:..|....:.:..::|.  
Zfish    75 MSRDAV-----------KFGRMSKKQR------DSLYAEVQKHQQSQERAGGLGNGISSHTGD-- 120

  Fly   137 SQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAINRLMRTQKEAISVM 201
                   ::|.||....:|.|.|:.      |....:|.|.:.||                    
Zfish   121 -------EAGENGNGHSRAYSRGSS------TTLSDLDDITTLPD-------------------- 152

  Fly   202 EKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTKFMSSPTDGVEIISKIVDSPAD 266
                          ..|.|.|                 ||                         
Zfish   153 --------------GLLFDLP-----------------LT------------------------- 161

  Fly   267 VVEFMQNLMHSPEDAIDIMNKFMNTPAEALRILNRILSGGGANAAQQTADRKPLLDKEPAVKPAA 331
                       ||:|.|..         :|.:|      ||::....::...|..:::       
Zfish   162 -----------PEEAADYC---------SLELL------GGSSGNSSSSQSSPESNRQ------- 193

  Fly   332 PAERAD-TVIQSMLGNSPPISPHDAAVDLQYHSPGVGEQPSTSSSHPLPYIANSPDFDLKTFMQT 395
              |..| |.|:...     :|||::.:             .|.|      |.|.|:         
Zfish   194 --EFGDVTHIKHEY-----MSPHESGL-------------FTRS------ILNPPE--------- 223

  Fly   396 NYNDEPSLDSDFSINSIESVLSEVIRIEYQAFNSIQQAASRVKEEMSYGTQSTYGGCNSAANNSQ 460
                      ..|:..||.:...||:                                       
Zfish   224 ----------GCSLMEIERITQNVIK--------------------------------------- 239

  Fly   461 PHLQQPICAPSTQQLDRELNEAEQMKLRELRLASEALYDPVDEDLSALMMGDDRIKPDDTRHNPK 525
            .|:                 |..|....||:..:..||.|  |::...     :.||.:......
Zfish   240 SHI-----------------ETSQYSTEELKRLAWTLYTP--EEIRVY-----QNKPTEMLWQQC 280

  Fly   526 LLQLINLTAVAIKRLIKMAKKITAFRDMCQEDQVALLKGGCTEMMIMRSVMIYDDDRAAWKVPHT 590
            .:||.|    ||:.:::.||:|:.|.|:.|.||:.|||.||.:::::|....|:.          
Zfish   281 AVQLTN----AIQYVVEFAKRISGFMDLSQNDQIILLKAGCLDVLLIRMCRAYNP---------- 331

  Fly   591 KENMGNIRTDLL---KFAEGNIYE------------EHQKFITTFDEKWRMDENIILIMCAIVLF 640
                  |...||   |||...:::            |..|.::    :.::....:.:..|.||.
Zfish   332 ------INNTLLFDGKFASPQLFKALGCDDLVSAVFEMAKTLS----RLQLSGEEMALFTATVLL 386

  Fly   641 TSARSRVIHKDVIRLEQNSYYYLLRRYLESVYSGCEARNAFIKLIQKISDVERLNKFIINVYLN- 704
            :..|..:.....::..|...|..|:.||..  ||....    ||.:.:|.:..: |.|.|:::: 
Zfish   387 SPDRPWLTDAQKVQKLQEKVYVALQHYLHK--SGVHEE----KLARMVSKLPMM-KSICNLHIDK 444

  Fly   705 ------VNPS---QVEPLLREIF 718
                  ::|.   ....|.||:|
Zfish   445 LEFFRLLHPETAYNFPALYREVF 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 32/90 (36%)
NR_LBD 462..>573 CDD:299703 29/110 (26%)
NR_LBD_F1 523..702 CDD:132727 45/193 (23%)
rorcaNP_001076288.1 NR_DBD_ROR 3..97 CDD:143526 35/103 (34%)
NR_LBD 229..467 CDD:299703 64/331 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593358
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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