DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and pparab

DIOPT Version :10

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001096037.1 Gene:pparab / 557714 ZFINID:ZDB-GENE-990415-211 Length:459 Species:Danio rerio


Alignment Length:91 Identity:35/91 - (38%)
Similarity:47/91 - (51%) Gaps:7/91 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQF-TCPFNQNCDITVVTRRFCQKCRLRKCLDI 70
            |.||.|:|.||::....||.||.||||....|.:: .|  .:.|.|....|..||.||.:|||.:
Zfish    97 CRVCSDRASGYHYGVHACEGCKGFFRRTIRLKLEYDKC--ERRCKIQKKNRNKCQYCRFQKCLSV 159

  Fly    71 GMKSENI----MSEEDKLIKRRKIET 92
            ||....|    |.:.:||..:.:|.|
Zfish   160 GMSHNAIRFGRMPQSEKLRLKAEILT 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 35/91 (38%)
NR_LBD 462..>573 CDD:472173
NR_LBD_F1 523..702 CDD:132727
pparabNP_001096037.1 NR_DBD_Ppar 96..179 CDD:143523 33/83 (40%)
C4 zinc finger; ZnF_C4 97..161 27/65 (42%)
NR_LBD_PPAR 193..458 CDD:132730
ligand binding domain of hormone receptors (HOLI) 279..429
Blue background indicates that the domain is not in the aligned region.

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