DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hr96 and nr1h5

DIOPT Version :10

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_005166790.1 Gene:nr1h5 / 557500 ZFINID:ZDB-GENE-080403-3 Length:487 Species:Danio rerio


Alignment Length:236 Identity:69/236 - (29%)
Similarity:102/236 - (43%) Gaps:64/236 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQKCRLRKCLDIG 71
            |.||||||.||::||:|||.||.||||:...|..:.|....:|::.:..||.||.||||||..:|
Zfish   130 CVVCGDKASGYHYNALTCEGCKGFFRRSVTKKAVYHCKSGGSCEMDMYMRRKCQDCRLRKCRAVG 194

  Fly    72 MKSENIMSEEDKLIKR-RKIETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHYSGSQ 135
            |.:|.:::|.....|| ||                     |.:.|.|..   ||:...|.||.|:
Zfish   195 MLAECLLTEVQCQSKRLRK---------------------GSKHRGHNG---SSARAEDDYSESR 235

  Fly   136 DSQSCGSADSG-ANGCSGRQ---------------------------ASSPGTQVNPLQMTAEKI 172
            ...|....::. ::|.|..|                           :|...|.:.|.|  .||:
Zfish   236 SVSSTSRINTRVSSGFSREQRCILNRIVEAFRRYIIQDNTHCRVPLWSSLTNTHLTPPQ--TEKL 298

  Fly   173 VDQIVSDP-----DRASQAINRLMRTQKEAISVMEKVISSQ 208
            :..:.|.|     |.:.|  |.|:  ...::.||..:::.|
Zfish   299 LQFLRSVPGFDLLDSSDQ--NTLL--SSASVEVMFLLLAQQ 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 41/91 (45%)
NR_LBD 462..>573 CDD:472173
NR_LBD_F1 523..702 CDD:132727
nr1h5XP_005166790.1 NR_DBD_like 127..210 CDD:413390 37/79 (47%)
NR_LBD 288..478 CDD:472173 14/54 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.