Protein Alignment Hr96 and rarab

DIOPT Version :9

• Sequence 1: NP_524493.1
• Gene: Hr96 / 42993
• FlyBaseID: FBgn0015240
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: XP_005164086.1
• Gene: rarab / 555364
• ZFINID: ZDB-GENE-980526-72
• Length: 460
• Species: Danio rerio
• Alignment Length: 462
• Identity: 95/462 - (20%)
• Similarity: 153/462 - (33%)
• Gaps: 174/462 - (37%)

  Fly     2 SPP------KNCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQ 60
            |||      |.|.||.||:.||::....||.||.||||:......:||...::|.|..|||..||
Zfish    74 SPPPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKSCIINKVTRNRCQ 138

  Fly    61 KCRLRKCLDIGMKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPAD--- 122
            .|||:|||::||..|::.::.:|..|..|      |:..:||...:.|.:...|:..||..:
Zfish   139 YCRLQKCLEVGMSKESVRNDRNKRKKDDK------KQECLENYVLSPDTEKMIEQVRKAHQETFP 197

  Fly   123 --------SSSSNLDH------------------------------------------------- 130
                    :::::.||
Zfish   198 SLCQLGKYTTNNSADHRVALDVDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAAC 262

  Fly   131 -----------YSGSQDSQSCGSADSGANGCSGRQASSPGTQVNPLQM--------------TAE 170
                       |:..||:.:                .|.|..:|..||              .|.
Zfish   263 LDILILRICTRYTPDQDTMT----------------FSDGLTLNRTQMHNAGFGPLTDLVFAFAN 311

  Fly   171 KIVDQIVSDPDRASQAINRLMRTQKEAISVMEKVISSQKDALRLVSHLIDYPGDALKIISKFMNS 235
            :::...:.|.:....:...|:...::.:...:||...|:..|           :||||..:  |.
Zfish   312 QLLPLEMDDAETGLLSAICLLCGDRQDLEQSDKVDELQEPLL-----------EALKIYVR--NR 363

  Fly   236 PFNALTVFTKFMSSPTD-------GVE-IISKIVDSPADVVEFMQNLMHSPEDAIDIMNKFMNTP 292
            ..:...:|.|.:...||       |.| :|:..::.|..:...:|.::.:.|.
Zfish   364 RPHKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG------------ 416

  Fly   293 AEALRILNRILSGGGANAAQQTADRKPLLDKEPAVKPAAPAERADTVIQSMLGNSPPISPHDAAV 357
                      |.|||:..|.....       ....|.|.|.           ..||.:||..|..
Zfish   417 ----------LEGGGSKGAGGGGG-------GGGGKGAPPG-----------SCSPSLSPSSAHS 453

  Fly   358 DLQYHSP 364
            ....|||
Zfish   454 SPSAHSP 460

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hr96	NP_524493.1	NR_DBD_CAR	5..98	CDD:143524	38/92 (41%)
		NR_LBD	462..>573	CDD:299703
		NR_LBD_F1	523..702	CDD:132727
rarab	XP_005164086.1	NR_DBD_RAR	80..155	CDD:143522	34/74 (46%)
		NR_LBD_RAR	184..413	CDD:132735	34/257 (13%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170593355
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.930