Protein Alignment Hr96 and Rorb

DIOPT Version :9

• Sequence 1: NP_524493.1
• Gene: Hr96 / 42993
• FlyBaseID: FBgn0015240
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: NP_001257887.1
• Gene: Rorb / 309288
• RGDID: 1306778
• Length: 459
• Species: Rattus norvegicus
• Alignment Length: 738
• Identity: 133/738 - (18%)
• Similarity: 232/738 - (31%)
• Gaps: 321/738 - (43%)

  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQKCRLRKCLDIG 71
            |.:||||:.|.::..:|||.||.||||:......::||..:||.|....|..||.|||:|||.:|
  Rat    10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALG 74

  Fly    72 MKSENIMSEEDKLIKRRK----IETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHYS 132
            |..:.:  :..::.|:::    .|..:.::||.            |:|..:             |
  Rat    75 MSRDAV--KFGRMSKKQRDSLYAEVQKHQQRLQ------------EQRQQQ-------------S 112

  Fly   133 GSQDSQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAINRLMRTQKEA 197
            |..::.:...:.|.:||.|.....:.||..|
  Rat   113 GEAEALARVYSSSISNGLSNLNTETGGTYAN---------------------------------- 143

  Fly   198 ISVMEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTKFMSSPTDGVEIISKIVD 262
                              .|:||.|                           .::|
  Rat   144 ------------------GHVIDLP---------------------------KSEG--------- 154

  Fly   263 SPADVVEFMQNLMHSPEDAIDIMNKFMNTPAEALRILNRILSGGGANAAQQTADRKPLLDKEPAV 327
                                     :.|           |.||                  :|
  Rat   155 -------------------------YYN-----------IDSG------------------QP-- 163

  Fly   328 KPAAPAERADTVIQSMLGNSPPISPHDAAVDLQYHSPGVGEQPSTSSSHPLPYIANSPDFDLKTF 392
                                   ||..:.:|:    .|:.:            |...|.:||.:.
  Rat   164 -----------------------SPDQSGLDM----TGIKQ------------IKQEPIYDLTSV 189

  Fly   393 MQTNYNDEPSLDSDFSINSIESVLSEVIRIEYQAFNSIQQAASRVKEEMSYGTQSTYGGCNSAAN 457
                    |:|                  ..|.:||:.|.|......|:.          ..|.|
  Rat   190 --------PNL------------------FTYSSFNNGQLAPGITMSEID----------RIAQN 218

  Fly   458 NSQPHLQQPICAPSTQQLDR---ELNEAEQMKLRELRLASEALYDPVDEDLSALMMGDDRIKPDD 519
            ..:.||:  .|..:.::|.:   :.:..|::|..:.: :.|||:...
  Rat   219 IIKSHLE--TCQYTMEELHQLAWQTHTYEEIKAYQSK-SREALWQQC------------------ 262

  Fly   520 TRHNPKLLQLINLTAVAIKRLIKMAKKITAFRDMCQEDQVALLKGGCTEMMIMRSVMIYDDDRAA 584
                     .|.:|. ||:.:::.||:||.|.::||.||:.|||.||.|::::|....:
  Rat   263 ---------AIQITH-AIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAF------ 311

  Fly   585 WKVPHTKENMGNIRTDLLKFAEGNIYEEHQKFIT---------TFDE-----KWRMDENIILIMC 635
                       |...:.:.| ||. |...|.|..         .||.     ..::.|..|.:..
  Rat   312 -----------NPLNNTVLF-EGK-YGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFS 363

  Fly   636 AIVLFTSARSRVIHKDVIRLEQNSYYYLLRRYLESVYSGCEARNAFIKLIQKISDVERLNKFIIN 700
            :.||.:..|:.::....::..|...|:.|:..::..:...|.....|..|..|:.|..|:...:.
  Rat   364 SAVLISPDRAWLLEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQ 428

  Fly   701 VYLNVNPSQVE----PLLREIFD 719
            |:...:|..|.    ||.:|:|:
  Rat   429 VFKQSHPDIVNTLFPPLYKELFN 451

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hr96	NP_524493.1	NR_DBD_CAR	5..98	CDD:143524	33/94 (35%)
		NR_LBD	462..>573	CDD:299703	28/113 (25%)
		NR_LBD_F1	523..702	CDD:132727	43/192 (22%)
Rorb	NP_001257887.1	NR_DBD_ROR	3..97	CDD:143526	32/88 (36%)
		NR_LBD_ROR_like	210..450	CDD:132737	61/299 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166351554
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.840