DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and raraa

DIOPT Version :9

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_005156109.1 Gene:raraa / 30680 ZFINID:ZDB-GENE-980526-284 Length:447 Species:Danio rerio


Alignment Length:419 Identity:102/419 - (24%)
Similarity:166/419 - (39%) Gaps:107/419 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SPP------KNCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQ 60
            |||      |.|.||.||:.||::....||.||.||||:......:||...:||.|..|||..||
Zfish    67 SPPPPPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQ 131

  Fly    61 KCRLRKCLDIGMKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADS-- 123
            .|||:|||::||..|::.::.:|..|..|      |....||.|.:.|.:...:|..||..::  
Zfish   132 YCRLQKCLEVGMSKESVRNDRNKKKKEEK------KPECTENYTLSPDTEQMIDRVRKAHQETFP 190

  Fly   124 SSSNLDHYSGSQDSQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAIN 188
            |...|..|:.|..|:...:.|                 |:.....:|.....|:...:.|.|...
Zfish   191 SLCQLGKYTTSNSSERRVALD-----------------VDLWDKFSELSTKCIIKTVEFAKQLPG 238

  Fly   189 RLMRTQKEAISVMEKV------------ISSQKDALRLVSHLIDYPGDALKI-ISKFMNSPFNAL 240
            ....|..:.|::::..            .:.::|.:..        .|.|.: .::..|:.|..|
Zfish   239 FTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTF--------SDGLTLNRTQMHNAGFGPL 295

  Fly   241 T--VF---TKFMSSPTDGVE--IISKIVDSPADVVEFMQNLMHSPEDAIDIMNKFMNTPAEALRI 298
            |  ||   .:.:....|..|  ::|.|.....|..:..|      .|.:|::.:.:   .|||:|
Zfish   296 TDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQ------ADKVDVLQEPL---LEALKI 351

  Fly   299 LNRILSGGGANAAQQTADRKPLLDKEPAVKP-------------AAPAERADTVIQSMLGNSPPI 350
            ..|              :|:|   .:|.:.|             |..|||..|:...:.|:.||:
Zfish   352 YVR--------------NRRP---HKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPL 399

  Fly   351 SPHDAAVDLQYHSPGV----GEQPSTSSS 375
                 ..::..:|.|:    |.|.|.:|:
Zfish   400 -----IQEMLENSEGLESSSGAQGSRASA 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 39/92 (42%)
NR_LBD 462..>573 CDD:299703
NR_LBD_F1 523..702 CDD:132727
raraaXP_005156109.1 NR_DBD_RAR 72..156 CDD:143522 36/83 (43%)
NR_LBD_RAR 177..406 CDD:132735 50/284 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593354
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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