DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hr96 and raraa

DIOPT Version :10

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_005156109.1 Gene:raraa / 30680 ZFINID:ZDB-GENE-980526-284 Length:447 Species:Danio rerio


Alignment Length:419 Identity:102/419 - (24%)
Similarity:166/419 - (39%) Gaps:107/419 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SPP------KNCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQ 60
            |||      |.|.||.||:.||::....||.||.||||:......:||...:||.|..|||..||
Zfish    67 SPPPPPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQ 131

  Fly    61 KCRLRKCLDIGMKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADS-- 123
            .|||:|||::||..|::.::.:|..|..|      |....||.|.:.|.:...:|..||..::  
Zfish   132 YCRLQKCLEVGMSKESVRNDRNKKKKEEK------KPECTENYTLSPDTEQMIDRVRKAHQETFP 190

  Fly   124 SSSNLDHYSGSQDSQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAIN 188
            |...|..|:.|..|:...:.|                 |:.....:|.....|:...:.|.|...
Zfish   191 SLCQLGKYTTSNSSERRVALD-----------------VDLWDKFSELSTKCIIKTVEFAKQLPG 238

  Fly   189 RLMRTQKEAISVMEKV------------ISSQKDALRLVSHLIDYPGDALKI-ISKFMNSPFNAL 240
            ....|..:.|::::..            .:.::|.:..        .|.|.: .::..|:.|..|
Zfish   239 FTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTF--------SDGLTLNRTQMHNAGFGPL 295

  Fly   241 T--VF---TKFMSSPTDGVE--IISKIVDSPADVVEFMQNLMHSPEDAIDIMNKFMNTPAEALRI 298
            |  ||   .:.:....|..|  ::|.|.....|..:..|      .|.:|::.:.:   .|||:|
Zfish   296 TDLVFAFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQ------ADKVDVLQEPL---LEALKI 351

  Fly   299 LNRILSGGGANAAQQTADRKPLLDKEPAVKP-------------AAPAERADTVIQSMLGNSPPI 350
            ..|              :|:|   .:|.:.|             |..|||..|:...:.|:.||:
Zfish   352 YVR--------------NRRP---HKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPL 399

  Fly   351 SPHDAAVDLQYHSPGV----GEQPSTSSS 375
                 ..::..:|.|:    |.|.|.:|:
Zfish   400 -----IQEMLENSEGLESSSGAQGSRASA 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 39/92 (42%)
NR_LBD 462..>573 CDD:472173
NR_LBD_F1 523..702 CDD:132727
raraaXP_005156109.1 NR_DBD_RAR 72..156 CDD:143522 36/83 (43%)
NR_LBD_RAR 177..406 CDD:132735 50/284 (18%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.