DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hr96 and thrb

DIOPT Version :9

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_021323659.1 Gene:thrb / 30607 ZFINID:ZDB-GENE-990415-268 Length:508 Species:Danio rerio


Alignment Length:725 Identity:117/725 - (16%)
Similarity:203/725 - (28%) Gaps:354/725 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKK---QFTCPFNQNCDITVVTRRFCQKCRLRKCL 68
            |.||||||.||::..:|||.||.|||| .:.|.   .:.|.:...|.|..|||..||:||.:||:
Zfish   125 CVVCGDKATGYHYRCITCEGCKGFFRR-TIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCI 188

  Fly    69 DIGMKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHYSG 133
            .:||.::.::.:..:|.||:.||.||.:||..|......|                         
Zfish   189 AVGMATDLVLDDSKRLAKRKLIEENRERRRREELQKTVWD------------------------- 228

  Fly   134 SQDSQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAINRLMRTQKEAI 198
                                       :..|.|...|.|  ::|::...|:.|            
Zfish   229 ---------------------------RPEPTQEEWEMI--RVVTEAHMATNA------------ 252

  Fly   199 SVMEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTKFMSSPTDGVEIISKIVDS 263
                                   .|:..|...||:                              
Zfish   253 -----------------------QGNHWKQKRKFL------------------------------ 264

  Fly   264 PADVVEFMQNLMHSPEDAIDIMNKFMNTPAEALRILNRILSGGGANAAQQTADRKPLLDKEPAVK 328
                                         .|...:||.|.......:.|...          .||
Zfish   265 -----------------------------VEEAMLLNEITCNLFCTSDQSAV----------GVK 290

  Fly   329 PAAPAERADTVIQSMLGNSPPISPHDAAVDLQYHSPGVGEQPSTSSSHPLPYIANSPDFDLKTFM 393
            .|.|.:         :|::|                                |.|:|:.:     
Zfish   291 EAKPED---------IGSAP--------------------------------IVNAPEGN----- 309

  Fly   394 QTNYNDEPSLDSDFSINSIESVLSEVIRIEYQAFNSIQQAASRVKEEMSYGTQSTYGGCNSAANN 458
                                       :::.:||:                              
Zfish   310 ---------------------------KVDIEAFS------------------------------ 317

  Fly   459 SQPHLQQPICAPSTQQLDRELNEAEQMKLRELRLASEALYDPVDEDLSALMMGDDRIKPDDTRHN 523
                                                                             
Zfish   318 ----------------------------------------------------------------- 317

  Fly   524 PKLLQLINLTAVAIKRLIKMAKKITAFRDMCQEDQVALLKGGCTEMMIMRSVMIYDDDRAAWKVP 588
                |...:...||.|::..|||:..|.::..|||:.||||.|.|:|.:|:.:.||.:.....: 
Zfish   318 ----QFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTL- 377

  Fly   589 HTKENMGNIRTDLLKFAEGNIYEEHQKFITTFD-----EKWRMDENIILIMCAIVLFTSARSRVI 648
              ...|...|..|.....|.:.:      ..||     ..:.:|::.:.::.|::|.:|.|..:.
Zfish   378 --NGEMAVTRGQLKNGGLGVVSD------AIFDLGVSLSSFNLDDSEVALLQAVILLSSDRPGLT 434

  Fly   649 HKDVIRLEQNSYYYLLRRYLESVYSGCEARNAFIKLIQKISDVERLNKFIINVYLNVN---PSQV 710
            ..:.|...|..:......|:.  |...:..:.:.||:.|::|:..:.....:.:|::.   |:::
Zfish   435 SVERIERCQEEFLLAFEHYIN--YRKHKVAHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTEL 497

  Fly   711 -EPLLREIFD 719
             .||..|:|:
Zfish   498 FPPLFLEVFE 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 40/93 (43%)
NR_LBD 462..>573 CDD:299703 18/110 (16%)
NR_LBD_F1 523..702 CDD:132727 40/183 (22%)
thrbXP_021323659.1 NR_DBD_TR 124..210 CDD:143519 36/85 (42%)
NR_LBD_TR 234..505 CDD:132733 70/559 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593360
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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