DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and rarga

DIOPT Version :10

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_068072765.2 Gene:rarga / 30606 ZFINID:ZDB-GENE-980526-531 Length:514 Species:Danio rerio


Alignment Length:506 Identity:99/506 - (19%)
Similarity:160/506 - (31%) Gaps:189/506 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SPP------KNCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQ 60
            |||      |.|.||.||:.||::...:||.||.||||:......:||..::||.|..|||..||
Zfish    74 SPPPPPRVYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQ 138

  Fly    61 KCRLRKCLDIGMK-------SENIMSEEDKLIKRRKIE----------------TNRAKRRLMEN 102
            .|||:||.::||.       .|.:.::.:|..|..|.|                .|:..:...|.
Zfish   139 YCRLQKCFEVGMSKEEGNKPKETVRNDRNKKKKDVKDEVIPPESYELSGELEELVNKVSKAHQET 203

  Fly   103 GTDACDA---DGGEERDHKAPAD---------------------------------------SSS 125
            ....|..   ......||:...|                                       ..|
Zfish   204 FPSLCQLGKYTTNSSSDHRIQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKS 268

  Fly   126 SNLD--------HYSGSQDSQSCGSA---------DSGANGCSGRQASSPGTQVNPLQM--TAEK 171
            :.||        .|:..||:.:....         ::|....:....:..| |:.||:|  |...
Zfish   269 ACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAG-QLLPLEMDDTETG 332

  Fly   172 IVDQI---------VSDPDRASQAINRLMRTQKEAISVMEKVISSQKDALRLVSHLIDYPGDALK 227
            ::..|         :.:|:|    ::||.....||:.:..:.....|      .|:  :|...:|
Zfish   333 LLSAICLICGDRMDLEEPER----VDRLQEPLLEALKIYARRRRPNK------PHM--FPRMLMK 385

  Fly   228 IISKFMNSPFNALTVFTKFMSSPTDGVE-IISKIVDSPADVVEFMQNLMHSPEDAIDIMNKFMNT 291
            |               |......|.|.| .|:..::.|..:...::.::.:||...|        
Zfish   386 I---------------TDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEAFED-------- 427

  Fly   292 PAEALRILNRILSGGGANAAQQTADRKPLLDKEPAVKPAAPAERADTVIQSMLGNSPPISPHDAA 356
                               ..:..::||    ||                     .||..|..|.
Zfish   428 -------------------QSEATEKKP----EP---------------------EPPAPPPPAL 448

  Fly   357 VDLQYHSPGVGEQPST-SSSHPLPYIANSPDFDLKTFMQTNYNDEPSLDSD 406
            :.::.......:..:| :.|.|.|...:..|.|        ..:|...|||
Zfish   449 LTMKKEQEDEDDSWATENGSEPSPEEEDDDDED--------GEEERGTDSD 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 39/115 (34%)
NR_LBD 462..>573 CDD:472173
NR_LBD_F1 523..702 CDD:132727
rargaXP_068072765.2 None
Blue background indicates that the domain is not in the aligned region.

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