DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hr96 and Thrb

DIOPT Version :9

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_006251771.1 Gene:Thrb / 24831 RGDID:3858 Length:514 Species:Rattus norvegicus


Alignment Length:344 Identity:89/344 - (25%)
Similarity:132/344 - (38%) Gaps:114/344 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SPPKN---------------CAVCGDKALGYNFNAVTCESCKAFFRRNALAKK---QFTCPFNQN 48
            |||.:               |.||||||.||::..:|||.||.|||| .:.|.   .::|.:...
  Rat   140 SPPHSHKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRR-TIQKSLHPSYSCKYEGK 203

  Fly    49 CDITVVTRRFCQKCRLRKCLDIGMKSENIMSEEDKLIKRRKIETNRAKRR--------------- 98
            |.|..|||..||:||.:||:.:||.::.::.:..:|.||:.||.||.|||               
  Rat   204 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEPT 268

  Fly    99 -----LMENGTD---ACDADGGEERDHK--APADSSSSNLDHYSGSQDSQSCGSADSGANGCSGR 153
                 |::..|:   |.:|.|...:..:  .|.|...:.:              .::...|....
  Rat   269 DEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPI--------------VNAPEGGKVDL 319

  Fly   154 QASSPGTQVNPLQMT-----AEKI--------VDQIV-----------------SDPDRASQAIN 188
            :|.|..|::....:|     |:|:        .|||:                 .|||..:..:|
  Rat   320 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLN 384

  Fly   189 RLMRTQKEAISVMEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFN------ALTVFTKFM 247
            ..|...:..:         :...|.:||..|...|.:|        |.||      ||......|
  Rat   385 GEMAVTRGQL---------KNGGLGVVSDAIFDLGMSL--------SSFNLDDTEVALLQAVLLM 432

  Fly   248 SSPTDG---VEIISKIVDS 263
            ||...|   ||.|.|..||
  Rat   433 SSDRPGLACVERIEKYQDS 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 41/110 (37%)
NR_LBD 462..>573 CDD:299703
NR_LBD_F1 523..702 CDD:132727
ThrbXP_006251771.1 NR_DBD_TR 159..245 CDD:143519 36/86 (42%)
NR_LBD_TR 269..511 CDD:132733 43/214 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351556
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

Return to query results.
Submit another query.