Protein Alignment Hr96 and Thrb

DIOPT Version :10

• Sequence 1: NP_524493.1
• Gene: Hr96 / 42993
• FlyBaseID: FBgn0015240
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: XP_006251771.1
• Gene: Thrb / 24831
• RGDID: 3858
• Length: 514
• Species: Rattus norvegicus
• Alignment Length: 344
• Identity: 89/344 - (25%)
• Similarity: 132/344 - (38%)
• Gaps: 114/344 - (33%)

  Fly     2 SPPKN---------------CAVCGDKALGYNFNAVTCESCKAFFRRNALAKK---QFTCPFNQN 48
            |||.:               |.||||||.||::..:|||.||.|||| .:.|.   .::|.:...
  Rat   140 SPPHSHKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRR-TIQKSLHPSYSCKYEGK 203

  Fly    49 CDITVVTRRFCQKCRLRKCLDIGMKSENIMSEEDKLIKRRKIETNRAKRR--------------- 98
            |.|..|||..||:||.:||:.:||.::.::.:..:|.||:.||.||.|||
  Rat   204 CIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEPT 268

  Fly    99 -----LMENGTD---ACDADGGEERDHK--APADSSSSNLDHYSGSQDSQSCGSADSGANGCSGR 153
                 |::..|:   |.:|.|...:..:  .|.|...:.:              .::...|....
  Rat   269 DEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPI--------------VNAPEGGKVDL 319

  Fly   154 QASSPGTQVNPLQMT-----AEKI--------VDQIV-----------------SDPDRASQAIN 188
            :|.|..|::....:|     |:|:        .|||:                 .|||..:..:|
  Rat   320 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLN 384

  Fly   189 RLMRTQKEAISVMEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFN------ALTVFTKFM 247
            ..|...:..:         :...|.:||..|...|.:|        |.||      ||......|
  Rat   385 GEMAVTRGQL---------KNGGLGVVSDAIFDLGMSL--------SSFNLDDTEVALLQAVLLM 432

  Fly   248 SSPTDG---VEIISKIVDS 263
            ||...|   ||.|.|..||
  Rat   433 SSDRPGLACVERIEKYQDS 451

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hr96	NP_524493.1	NR_DBD_CAR	5..98	CDD:143524	41/110 (37%)
		NR_LBD	462..>573	CDD:472173
		NR_LBD_F1	523..702	CDD:132727
Thrb	XP_006251771.1	NR_DBD_TR	159..245	CDD:143519	36/86 (42%)
		NR_LBD_TR	269..511	CDD:132733	43/214 (20%)