DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and Rarb

DIOPT Version :10

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_017455067.1 Gene:Rarb / 24706 RGDID:3535 Length:455 Species:Rattus norvegicus


Alignment Length:421 Identity:106/421 - (25%)
Similarity:170/421 - (40%) Gaps:89/421 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSPP---KNCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQKC 62
            :.||   |.|.||.||:.||::....||.||.||||:......:||..::||.|..|||..||.|
  Rat    79 LPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYC 143

  Fly    63 RLRKCLDIGMKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADS--SS 125
            ||:||.::||..|::.::      |.|.:...:|:...|:.....:.|...|:..||..::  |.
  Rat   144 RLQKCFEVGMSKESVRND------RNKKKKEPSKQECTESYEMTAELDDLTEKIRKAHQETFPSL 202

  Fly   126 SNLDHYSGSQDSQSCGSADSG--------ANGCSGR----QASSPGTQVNPLQMTAEKIVDQIVS 178
            ..|..|:.:..:......|.|        |..|..:    ....||       .|...|.|||. 
  Rat   203 CQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPG-------FTGLTIADQIT- 259

  Fly   179 DPDRASQAINRLMRTQKEAISVME--KVISSQKDALRLVSHLIDYPGDALKI-ISKFMNSPFNAL 240
                       |::.....|.::.  ...:.::|.:..        .|.|.: .::..|:.|..|
  Rat   260 -----------LLKAACLDILILRICTRYTPEQDTMTF--------SDGLTLNRTQMHNAGFGPL 305

  Fly   241 T--VFT---KFMSSPTDGVE--IISKI---------VDSPADVVEFMQNLMHSPEDAIDIMNKFM 289
            |  |||   :.:....|..|  ::|.|         ::.|..|.:..:.|:.:.:  |.|..:..
  Rat   306 TDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALK--IYIRKRRP 368

  Fly   290 NTPAEALRILNRILSGGGANAAQQTADRKPLLDKE-PAVKPAAPAERADTVIQSMLGNS---PPI 350
            :.|....:||.:|......:|  :.|:|...|..| |...|        .:||.||.||   .|:
  Rat   369 SKPHMFPKILMKITDLRSISA--KGAERVITLKMEIPGSMP--------PLIQEMLENSEGHEPL 423

  Fly   351 SPHDAAVDLQYHSPGVGE---QPSTSSSHPL 378
            :|:.:. :...|||.|..   :.|..|..||
  Rat   424 TPNSSG-NTAEHSPSVSPSSVETSGVSQSPL 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 37/92 (40%)
NR_LBD 462..>573 CDD:472173
NR_LBD_F1 523..702 CDD:132727
RarbXP_017455067.1 NR_DBD_RAR 82..166 CDD:143522 37/89 (42%)
NR_LBD_RAR 186..416 CDD:132735 53/268 (20%)
Blue background indicates that the domain is not in the aligned region.

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