DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and Rorb

DIOPT Version :9

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_666207.3 Gene:Rorb / 225998 MGIID:1343464 Length:470 Species:Mus musculus


Alignment Length:738 Identity:133/738 - (18%)
Similarity:230/738 - (31%) Gaps:321/738 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQKCRLRKCLDIG 71
            |.:||||:.|.::..:|||.||.||||:......::||..:||.|....|..||.|||:|||.:|
Mouse    21 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALG 85

  Fly    72 MKSENIMSEEDKLIKRRK----IETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHYS 132
            |..:.:  :..::.|:::    .|..:.::||.            |:|..:             |
Mouse    86 MSRDAV--KFGRMSKKQRDSLYAEVQKHQQRLQ------------EQRQQQ-------------S 123

  Fly   133 GSQDSQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAINRLMRTQKEA 197
            |..::.:...:.|.:||.|.....:.||..|                                  
Mouse   124 GEAEALARVYSSSISNGLSNLNTETGGTYAN---------------------------------- 154

  Fly   198 ISVMEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTKFMSSPTDGVEIISKIVD 262
                              .|:||.|                           .::|...|.    
Mouse   155 ------------------GHVIDLP---------------------------KSEGYYSID---- 170

  Fly   263 SPADVVEFMQNLMHSPEDAIDIMNKFMNTPAEALRILNRILSGGGANAAQQTADRKPLLDKEPAV 327
                                                     ||                  :|  
Mouse   171 -----------------------------------------SG------------------QP-- 174

  Fly   328 KPAAPAERADTVIQSMLGNSPPISPHDAAVDLQYHSPGVGEQPSTSSSHPLPYIANSPDFDLKTF 392
                                   ||..:.:|:    .|:.:            |...|.:||.:.
Mouse   175 -----------------------SPDQSGLDM----TGIKQ------------IKQEPIYDLTSV 200

  Fly   393 MQTNYNDEPSLDSDFSINSIESVLSEVIRIEYQAFNSIQQAASRVKEEMSYGTQSTYGGCNSAAN 457
                    |:|                  ..|.:||:.|.|......|:.          ..|.|
Mouse   201 --------PNL------------------FTYSSFNNGQLAPGITMSEID----------RIAQN 229

  Fly   458 NSQPHLQQPICAPSTQQLDR---ELNEAEQMKLRELRLASEALYDPVDEDLSALMMGDDRIKPDD 519
            ..:.||:  .|..:.::|.:   :.:..|::|..:.: :.|||:...                  
Mouse   230 IIKSHLE--TCQYTMEELHQLAWQTHTYEEIKAYQSK-SREALWQQC------------------ 273

  Fly   520 TRHNPKLLQLINLTAVAIKRLIKMAKKITAFRDMCQEDQVALLKGGCTEMMIMRSVMIYDDDRAA 584
                     .|.:|. ||:.:::.||:||.|.::||.||:.|||.||.|::::|....:      
Mouse   274 ---------AIQITH-AIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAF------ 322

  Fly   585 WKVPHTKENMGNIRTDLLKFAEGNIYEEHQKFIT---------TFDE-----KWRMDENIILIMC 635
                       |...:.:.| ||. |...|.|..         .||.     ..::.|..|.:..
Mouse   323 -----------NPLNNTVLF-EGK-YGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFS 374

  Fly   636 AIVLFTSARSRVIHKDVIRLEQNSYYYLLRRYLESVYSGCEARNAFIKLIQKISDVERLNKFIIN 700
            :.||.:..|:.:|....::..|...|:.|:..::..:...|.....|..|..|:.|..|:...:.
Mouse   375 SAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQ 439

  Fly   701 VYLNVNPSQVE----PLLREIFD 719
            |:...:|..|.    ||.:|:|:
Mouse   440 VFKQSHPDIVNTLFPPLYKELFN 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 33/94 (35%)
NR_LBD 462..>573 CDD:299703 28/113 (25%)
NR_LBD_F1 523..702 CDD:132727 44/192 (23%)
RorbNP_666207.3 NR_DBD_ROR 14..108 CDD:143526 32/88 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 104..127 7/47 (15%)
NR_LBD_ROR_like 221..461 CDD:132737 62/299 (21%)
AF-2 456..461 2/4 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847975
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S7184
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.790

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