DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hr96 and Nr1h4

DIOPT Version :9

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001157172.1 Gene:Nr1h4 / 20186 MGIID:1352464 Length:488 Species:Mus musculus


Alignment Length:436 Identity:92/436 - (21%)
Similarity:157/436 - (36%) Gaps:145/436 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQKCRLRKCLDIG 71
            |.||||:|.||::||:|||.||.||||:......:.|....||.:.:..||.||:||||||.::|
Mouse   138 CVVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYKCKNGGNCVMDMYMRRKCQECRLRKCKEMG 202

  Fly    72 MKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHYSGSQD 136
            |.:|.:.:   .|:...:.::.|.::.:.::.....:.|..|.||.:                  
Mouse   203 MLAECMYT---GLLTEIQCKSKRLRKNVKQHADQTANEDDSEGRDLR------------------ 246

  Fly   137 SQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAINRLMRTQKEAISVM 201
                 ...|....|..:      |::...|.|   ::|.|:       .:.|:....|:....::
Mouse   247 -----QVTSTTKFCREK------TELTADQQT---LLDYIM-------DSYNKQRMPQEITNKIL 290

  Fly   202 EKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTKFMSSPTDGVEIISKIVDSPAD 266
            ::..|::::.|               |:::...|....|..|||.:..                 
Mouse   291 KEEFSAEENFL---------------ILTEMATSHVQILVEFTKKLPG----------------- 323

  Fly   267 VVEFMQNLMHSPEDAIDIMNKFMNTPAEAL-----RILNRILSGGGANAAQQTADRKPLLDKEPA 326
                .|.|.|  ||.|.::.   .:..||:     .|.|:.|..|.|:..::...:..:.|    
Mouse   324 ----FQTLDH--EDQIALLK---GSAVEAMFLRSAEIFNKKLPAGHADLLEERIRKSGISD---- 375

  Fly   327 VKPAAPAERADTVIQSMLGNSPPISPHDAAVDLQYHSP------GVGEQPSTSSSHPL--PYIAN 383
                                             :|.:|      .|||...|...:.|  ..:..
Mouse   376 ---------------------------------EYITPMFSFYKSVGELKMTQEEYALLTAIVIL 407

  Fly   384 SPDFD-LKTFMQTNYNDEPSLDSDFSINSIESVLSEVIRIEYQAFN 428
            |||.. :|.........||.||          ||.::.:: ||..|
Mouse   408 SPDRQYIKDREAVEKLQEPLLD----------VLQKLCKM-YQPEN 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 37/90 (41%)
NR_LBD 462..>573 CDD:299703
NR_LBD_F1 523..702 CDD:132727
Nr1h4NP_001157172.1 NR_DBD_FXR 135..222 CDD:143520 36/86 (42%)
NR_LBD_Fxr 264..483 CDD:132734 48/278 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24082
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.