DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and Nr1h4

DIOPT Version :10

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001157172.1 Gene:Nr1h4 / 20186 MGIID:1352464 Length:488 Species:Mus musculus


Alignment Length:438 Identity:91/438 - (20%)
Similarity:158/438 - (36%) Gaps:149/438 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQKCRLRKCLDIG 71
            |.||||:|.||::||:|||.||.||||:......:.|....||.:.:..||.||:||||||.::|
Mouse   138 CVVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYKCKNGGNCVMDMYMRRKCQECRLRKCKEMG 202

  Fly    72 MKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHYSGSQD 136
            |.:|.:.:   .|:...:.::.|.::.:.::.....:.|..|.||.:                  
Mouse   203 MLAECMYT---GLLTEIQCKSKRLRKNVKQHADQTANEDDSEGRDLR------------------ 246

  Fly   137 SQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEK--IVDQIVSDPDRASQAINRLMRTQKEAIS 199
                 ...|....|..:           .::||::  ::|.|:       .:.|:....|:....
Mouse   247 -----QVTSTTKFCREK-----------TELTADQQTLLDYIM-------DSYNKQRMPQEITNK 288

  Fly   200 VMEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTKFMSSPTDGVEIISKIVDSP 264
            ::::..|::::.|               |:::...|....|..|||.:..               
Mouse   289 ILKEEFSAEENFL---------------ILTEMATSHVQILVEFTKKLPG--------------- 323

  Fly   265 ADVVEFMQNLMHSPEDAIDIMNKFMNTPAEAL-----RILNRILSGGGANAAQQTADRKPLLDKE 324
                  .|.|.|  ||.|.::.   .:..||:     .|.|:.|..|.|:..::...:..:.|  
Mouse   324 ------FQTLDH--EDQIALLK---GSAVEAMFLRSAEIFNKKLPAGHADLLEERIRKSGISD-- 375

  Fly   325 PAVKPAAPAERADTVIQSMLGNSPPISPHDAAVDLQYHSP------GVGEQPSTSSSHPL--PYI 381
                                               :|.:|      .|||...|...:.|  ..:
Mouse   376 -----------------------------------EYITPMFSFYKSVGELKMTQEEYALLTAIV 405

  Fly   382 ANSPDFD-LKTFMQTNYNDEPSLDSDFSINSIESVLSEVIRIEYQAFN 428
            ..|||.. :|.........||.||          ||.::.:: ||..|
Mouse   406 ILSPDRQYIKDREAVEKLQEPLLD----------VLQKLCKM-YQPEN 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 37/90 (41%)
NR_LBD 462..>573 CDD:472173
NR_LBD_F1 523..702 CDD:132727
Nr1h4NP_001157172.1 NR_DBD_FXR 135..222 CDD:143520 36/86 (42%)
NR_LBD_Fxr 264..483 CDD:132734 46/275 (17%)
Blue background indicates that the domain is not in the aligned region.

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