DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and Ppard

DIOPT Version :9

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_035275.1 Gene:Ppard / 19015 MGIID:101884 Length:440 Species:Mus musculus


Alignment Length:429 Identity:93/429 - (21%)
Similarity:148/429 - (34%) Gaps:139/429 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQF-TCPFNQNCDITVVTRRFCQKCRLRKCLDI 70
            |.||||||.|:::....||.||.||||....|.:: .|  ::.|.|....|..||.||.:|||.:
Mouse    73 CRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKC--DRICKIQKKNRNKCQYCRFQKCLAL 135

  Fly    71 GMKSENI----MSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHY 131
            ||....|    |.|.:             ||:|:...|                           
Mouse   136 GMSHNAIRFGRMPEAE-------------KRKLVAGLT--------------------------- 160

  Fly   132 SGSQDSQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAINRLMRTQKE 196
                                    :|.|.|.||      ::.|.........:..:.....|:|:
Mouse   161 ------------------------ASEGCQHNP------QLADLKAFSKHIYNAYLKNFNMTKKK 195

  Fly   197 AISVMEKVISSQKDALRLVSHLIDYPGDALK--IISKFMNS--PFNALTVFTKFMSSPTDGVEII 257
            |.|::....|....   .|.|.|:....|.|  :..:.:|.  |:|.::|...:....|      
Mouse   196 ARSILTGKSSHNAP---FVIHDIETLWQAEKGLVWKQLVNGLPPYNEISVHVFYRCQST------ 251

  Fly   258 SKIVDSPADVVEFMQNLMHSPEDAIDIMNKFMNTPAEALR-------------ILNR---ILSGG 306
              .|::..::.||.:|:.       :..:.|:|.....|:             |:|:   :::.|
Mouse   252 --TVETVRELTEFAKNIP-------NFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANG 307

  Fly   307 GANAAQQ--TADRKPLLD-KEP----AVKPAAPAERADTVIQSMLGNSPPISPHDAAVDLQYHSP 364
            ......:  .:.|||..| .||    |||..| .|..|:.:...:          ||:.|....|
Mouse   308 SGFVTHEFLRSLRKPFSDIIEPKFEFAVKFNA-LELDDSDLALFI----------AAIILCGDRP 361

  Fly   365 GVGEQPSTSSSHPLPYIANSPDFDLKTFMQTNYNDEPSL 403
            |:...|...:....  |..:.:|.|    |.|:.|...|
Mouse   362 GLMNVPQVEAIQDT--ILRALEFHL----QVNHPDSQYL 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 34/95 (36%)
NR_LBD 462..>573 CDD:299703
NR_LBD_F1 523..702 CDD:132727
PpardNP_035275.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..53
NR_DBD_Ppar 72..155 CDD:143523 35/96 (36%)
NR_LBD_PPAR 172..439 CDD:132730 51/258 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
10.960

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