DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and nr1i3

DIOPT Version :9

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_031747336.1 Gene:nr1i3 / 100495136 XenbaseID:XB-GENE-479859 Length:448 Species:Xenopus tropicalis


Alignment Length:743 Identity:140/743 - (18%)
Similarity:215/743 - (28%) Gaps:387/743 - (52%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KNCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQKCRLRKCLD 69
            |.|:||||||.||:|:.:|||.||.||||:......|||||.::|.||...||.||.|||.||..
 Frog    61 KLCSVCGDKANGYHFHVLTCEGCKGFFRRSVSKGLHFTCPFTRSCPITKAKRRRCQACRLHKCFS 125

  Fly    70 IGMKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHYSGS 134
            :||:.:.||||: .|.:||.:.:.:.:.|              :.|....||             
 Frog   126 VGMRKDMIMSEQ-ALAERRALRSRKKQER--------------QSRREPGPA------------- 162

  Fly   135 QDSQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAINRLMRTQKEAIS 199
                      .||                   :|.|:                            
 Frog   163 ----------LGA-------------------LTEEQ---------------------------- 170

  Fly   200 VMEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTKFMSSPTDGVEIISKIVDSP 264
                        |:|||           ::|:.....|:           ||             
 Frog   171 ------------LQLVS-----------LLSEAQLKHFD-----------PT------------- 188

  Fly   265 ADVVEFMQNLMH-SPEDAIDIM---NKFMNTPAEALRILNRILSGGGANAAQQTADRKPLLDKEP 325
                  :.|..| .|:..:.:.   |..:.:||                                
 Frog   189 ------LSNFKHYRPQPLVHVFVYNNHTIPSPA-------------------------------- 215

  Fly   326 AVKPAAPAERADTVIQSMLGNSPPISPHDAAVDLQYHSPGVGEQPSTSSSHPLPYIANSPDFDLK 390
                                                               |.|.....||.:|.
 Frog   216 ---------------------------------------------------PFPTSGLFPDLNLS 229

  Fly   391 TFMQTNYNDEPSLDSDFSINSIESVLSEVIRIEYQAFNSIQQAASRVKEEMSYGTQSTYGGCNSA 455
            .....|.:..|.|.|.      .|.|.:|:                                   
 Frog   230 DPKYKNLSANPQLISS------GSFLPDVL----------------------------------- 253

  Fly   456 ANNSQPHLQQPICAPSTQQLDRELNEAEQMKLRELRLASEALYDPVDEDLSALMMGDDRIKPDDT 520
              |..||.                                       .|||..|           
 Frog   254 --NDLPHF---------------------------------------ADLSTYM----------- 266

  Fly   521 RHNPKLLQLINLTAVAIKRLIKMAKKITAFRDMCQEDQVALLKGGCTEMMIMRSVMIYDDDRAAW 585
                            |:::|:.||:|.|||.:..|||::||||...|:..::...:|       
 Frog   267 ----------------IQQVIQFAKEIPAFRALPMEDQISLLKGSSMEVAHVQFNRVY------- 308

  Fly   586 KVPHTKENMGNIRTDLLKFAEGNIYE--EHQKF------ITTFDE--------------KWRMDE 628
                      ||.|        |::|  :| ||      ||.|.|              |..:.|
 Frog   309 ----------NIET--------NVFECGKH-KFSIRHGVITGFQEMYLEPMMKFQIMLRKLNLHE 354

  Fly   629 NIILIMCAIVLFTSARSRVIHKDVIRLEQNSYYYLLRRYLESVYSGCEARNAFIKLIQKISDVER 693
            ....::.|:.||...|..|:..|:|...|.:....|:.|::..:...|.|..:.||:..::::..
 Frog   355 EEYALIEALCLFAPDRPGVVEHDIIDEMQENLALTLKCYMDLHHPPPEGRFLYPKLLSLLTELRT 419

  Fly   694 LN----KFIINVYLNVNPSQVEPLLREI 717
            ||    :.|:::. :::...|.||::||
 Frog   420 LNEEYTRQILHIQ-DISSENVTPLMKEI 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 46/92 (50%)
NR_LBD 462..>573 CDD:299703 21/110 (19%)
NR_LBD_F1 523..702 CDD:132727 48/204 (24%)
nr1i3XP_031747336.1 NR_DBD_VDR_like 63..134 CDD:143531 38/70 (54%)
NR_LBD 166..446 CDD:416257 86/579 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 100 1.000 Domainoid score I6900
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 178 1.000 Inparanoid score I3912
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D153746at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X988
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.060

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