DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and rorb.2

DIOPT Version :9

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_002938868.2 Gene:rorb.2 / 100491456 XenbaseID:XB-GENE-922434 Length:450 Species:Xenopus tropicalis


Alignment Length:741 Identity:133/741 - (17%)
Similarity:225/741 - (30%) Gaps:341/741 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQKCRLRKCLDIG 71
            |.:||||:.|.::..:|||.||.||||:......::|...:||.|....|..||.|||:|||::|
 Frog    10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNANYSCSRQRNCMIDRTNRNRCQHCRLQKCLELG 74

  Fly    72 MKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHYSGSQD 136
            |                                                             |:|
 Frog    75 M-------------------------------------------------------------SRD 78

  Fly   137 SQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAINRLMRT-QKEAISV 200
            :...|.       .|.:|..|...:|...|...|:::.:...|      .::|...| ....:|.
 Frog    79 AVKFGR-------MSKKQRDSLYAEVQKHQQNQEQVLARDTKD------TVSRSYSTGTSSCLSD 130

  Fly   201 MEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTKFMSSPTDGVEIISKIVDSPA 265
            :|: :|...|.|     |.|:|                 ||         .||......: :.| 
 Frog   131 LEE-LSGLSDGL-----LFDFP-----------------LT---------PDGCSSYYSL-ELP- 161

  Fly   266 DVVEFMQNLMHSPEDAIDIMNKFMNTPAEALRILNRILSGGGANAAQQTADRKPLLDKEPAVKPA 330
                                                                   |..||:..|:
 Frog   162 -------------------------------------------------------LSTEPSPDPS 171

  Fly   331 APAERADTVIQSMLGNSPPISPHDAAVD-LQYH-SPGVGEQPSTSSSHPLPYIANSPDFDLKTFM 393
                                  |...:| |..| |.|:.|                         
 Frog   172 ----------------------HGTTLDELPVHYSLGLIE------------------------- 189

  Fly   394 QTNYNDEPSLDSDFSINSIESVLSEVIRIEYQAFNSIQQAASRVKEEMSYGTQSTYGGCNSAANN 458
                 |:..||    :|..|        |||.:.|.|               :|..|.|...::.
 Frog   190 -----DQRLLD----LNGTE--------IEYVSQNII---------------RSHLGTCQFTSDE 222

  Fly   459 S-----QPHLQQPICAPSTQQLDRELNEAEQMKLRELRLASEALYDPVDEDLSALMMGDDRIKPD 518
            .     ..|.|:.:|:..:                                           ||.
 Frog   223 LSKMVWNAHSQEEVCSLQS-------------------------------------------KPC 244

  Fly   519 DTRHNPKLLQLINLTAVAIKRLIKMAKKITAFRDMCQEDQVALLKGGCTEMMIMRSVMIYDDDRA 583
            :.......:.:.|    ||:.:::.||::..|.::||.||:.|||.||.|::::|....::... 
 Frog   245 EMMWQLCAIHVSN----AIQYVVEFAKRLDGFMELCQNDQIVLLKAGCLEVLLIRMTRAFNPSN- 304

  Fly   584 AWKVPHT---KENMGNIR------TDLLKFAEGNIYEEHQKF--ITTFDEKWRMDENIILIMCAI 637
                 :|   :...|.|:      .|.|.||   |::..|..  ::..||:       |.:..|.
 Frog   305 -----NTVLFEGKFGGIQMFRSLGCDDLLFA---IFDLGQALCRLSLSDEE-------IALFTAA 354

  Fly   638 VLFTSARSRVIHKDVIRLEQNSYYYLLRRYLESVYSGCEARNAFIKLIQKISDVERLNKFIINVY 702
            ||.:..|.|:.....::..|:..:..|::.::..:  | :.:...|:|.|:.    |.|.|.|::
 Frog   355 VLMSPDRPRLTESKKVQKLQDRIFLALQKEIQKRH--C-SEDLLTKMISKLP----LMKTICNLH 412

  Fly   703 LN-------VNPSQVE---PLLREIF 718
            .:       ::|....   ||.:|:|
 Frog   413 ADKLEFFRILHPDTAHIFPPLYKEVF 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 30/90 (33%)
NR_LBD 462..>573 CDD:299703 21/110 (19%)
NR_LBD_F1 523..702 CDD:132727 44/189 (23%)
rorb.2XP_002938868.2 NR_DBD_ROR 3..97 CDD:143526 36/154 (23%)
NR_LBD 199..438 CDD:416257 62/331 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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