DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and rorc

DIOPT Version :9

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_031747715.1 Gene:rorc / 100489391 XenbaseID:XB-GENE-481075 Length:422 Species:Xenopus tropicalis


Alignment Length:400 Identity:81/400 - (20%)
Similarity:151/400 - (37%) Gaps:100/400 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   367 GEQPSTSSSHPLPYIANSPDFDLKTFMQTNYNDEPSLDSDFSIN---------SIESVLSEVIRI 422
            |::.:..||..||    ||      |:..::......|:..|:.         .|:|...|.|:.
 Frog    68 GDKTALPSSSELP----SP------FVSASWTGHGKWDTSCSVRPCPVPRTHPPIQSHHPEKIQT 122

  Fly   423 EYQAFNSIQQAASR---VKEEMSYGTQSTYGGCNSAANNSQPHLQQPIC--AP--STQQLDRELN 480
            |         |.||   .::...|...|..    :......|.||.|.|  :|  |:..|...|.
 Frog   123 E---------AVSRKSCFRDHQPYLEHSRL----NIFQRLPPTLQSPECYGSPNFSSCLLSERLI 174

  Fly   481 EAEQMKL---------RE-LRLASEALYDPVDEDLSALMMGDDRIKPDDTRHNPKLLQLINLTAV 535
            .|.::.|         || .:|..|:|.....|..:...:...:.|..|......:..:.:    
 Frog   175 SAVELDLLMQNVVGAYRETCKLHQESLQAMRWETFTPAEIQSFQQKTMDQMWERCVCHITD---- 235

  Fly   536 AIKRLIKMAKKITAFRDMCQEDQVALLKGGCTEMMIMR--------SVMIYDDDRAAWKVPHTKE 592
            ||:.:::.||:::.|.::...||:.|||.|..|::::|        :..||.:.           
 Frog   236 AIQYIVEFAKRLSGFMELNPNDQIVLLKAGAMELLLIRMSRAFNCYNSTIYFEG----------- 289

  Fly   593 NMGNIRTDLLKFAEGNIYEE---HQKFITTFDE-----KWRMDENIILIMCAIVLFTSARSRVIH 649
                      |:|..::::.   :......||.     ...:.|:.:....::||...::..:..
 Frog   290 ----------KYAPLDLFQSLGCNDLISAMFDLCHSLCALNLSEHEMAFFSSMVLLDPSQPWLQE 344

  Fly   650 KDVI-----RLEQNSYYYLLRR-YLESVYSGCEARNAFIKLIQKISDVERLNKFIINVYLNVNPS 708
            |:.:     :|:. |:..|||| ..||:......|...:.:.|  ..:|:||.| ..:|..:...
 Frog   345 KEKVESLHMKLDL-SFRQLLRRTRRESIICKLPQRGRLLGICQ--LHMEKLNIF-RQMYPGIAWE 405

  Fly   709 QVEPLLREIF 718
            :..||.:|:|
 Frog   406 RFPPLYKELF 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524
NR_LBD 462..>573 CDD:299703 30/124 (24%)
NR_LBD_F1 523..702 CDD:132727 37/200 (19%)
rorcXP_031747715.1 NR_LBD_ROR_like 177..415 CDD:132737 50/266 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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