DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hr96 and rarb

DIOPT Version :9

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_002932450.2 Gene:rarb / 100488600 XenbaseID:XB-GENE-481009 Length:447 Species:Xenopus tropicalis


Alignment Length:417 Identity:107/417 - (25%)
Similarity:168/417 - (40%) Gaps:99/417 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SPP------KNCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQ 60
            |||      |.|.||.||:.||::....||.||.||||:......:||...:||.|..|||..||
 Frog    70 SPPPPPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCVINKVTRNRCQ 134

  Fly    61 KCRLRKCLDIGMKSENIMSEEDKLIKR-RKIETNRAKRRLMENGTDACDADGGEERDHKAPADS- 123
            .|||::|.::||..|::.::.:|..|. .|||       .:||.....:.|...|:..||..:: 
 Frog   135 YCRLQRCFEVGMSKESVRNDRNKKKKEPSKIE-------CIENYEMTAELDDLTEKIRKAHQETF 192

  Fly   124 -SSSNLDHYSGSQDSQSCGSADSG--------ANGCSGR----QASSPGTQVNPLQMTAEKIVDQ 175
             |...|..|:.:..::.....|.|        |..|..:    ....||       .|:..|.||
 Frog   193 PSLCQLGKYTTNSSAEQRVRLDLGLWDKFSELATKCIIKIVEFAKRLPG-------FTSLTIADQ 250

  Fly   176 IVSDPDRASQAINRLMRTQKEAISVME--KVISSQKDALRLVSHLIDYPGDALKI-ISKFMNSPF 237
            |.            |::.....|.::.  ...:.::|.:..        .|.|.: .::..|:.|
 Frog   251 IT------------LLKAACLDILILRICTRYTPEQDTMTF--------SDGLTLNRTQMHNAGF 295

  Fly   238 NALT--VFT---KFMSSPTDGVE--IISKI---------VDSPADVVEFMQNLMHSPEDAIDIMN 286
            ..||  |||   :.:....|..|  ::|.|         ::.||.|.:..:.|:.:.:  |.|..
 Frog   296 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICEDRQDLEEPAKVDKLQEPLLEALK--IYIRK 358

  Fly   287 KFMNTPAEALRILNRI--LSGGGANAAQQTADRKPLLDKEPAVKPAAPAERADTVIQSMLGNSPP 349
            :..|.|....:||.:|  |....|..|::....|  |:...::.|         :||.||.||  
 Frog   359 RRPNKPHMFPKILMKITDLRSISAKGAERVITLK--LEIPGSMPP---------LIQEMLENS-- 410

  Fly   350 ISPHDAAVDLQYHSPGVGEQPSTSSSH 376
             ..|:|:..    ||   .:..|..||
 Frog   411 -EGHEASAS----SP---SEDKTEHSH 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 38/93 (41%)
NR_LBD 462..>573 CDD:299703
NR_LBD_F1 523..702 CDD:132727
rarbXP_002932450.2 NR_DBD_RAR 75..159 CDD:143522 34/83 (41%)
NR_LBD_RAR 179..409 CDD:132735 54/269 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.