DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and pparg

DIOPT Version :10

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_031757160.1 Gene:pparg / 100144687 XenbaseID:XB-GENE-483136 Length:475 Species:Xenopus tropicalis


Alignment Length:346 Identity:89/346 - (25%)
Similarity:129/346 - (37%) Gaps:80/346 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQF-TCPFNQNCDITVVTRRFCQKCRLRKCLDI 70
            |.||||||.|:::....||.||.||||....|..: .|  :.||.|...:|..||.||.:|||.:
 Frog   111 CRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYERC--DLNCRIHKKSRNKCQFCRFQKCLSV 173

  Fly    71 GMKSENI------MSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLD 129
            ||....|      .:|::||              |.|..:| .|....|..|.:..|       .
 Frog   174 GMSHNAIRFGRMPQAEKEKL--------------LAEISSD-IDQLNPESADQRVLA-------K 216

  Fly   130 H-YSGSQDSQSCGSADSGANGCSGRQA-SSPGT--QVNPLQMTAEKIVDQIVSDPDRASQAINRL 190
            | |.....|.....|.:.|. .:||.. .||..  .:|.|.|..::|..|..:.......||...
 Frog   217 HLYDSYLKSFPLTKAKARAI-LTGRATDKSPVVIYDMNSLMMGEDQIKGQCQAPEQNKEVAIRIF 280

  Fly   191 MRTQKEAISVMEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNAL------TVFTKFMS- 248
            .|.|..::..:.::....|          :.||    .:|..:|.....|      .:||...| 
 Frog   281 QRCQSRSVEAVREITEFAK----------NIPG----FVSLDLNDQVTLLKYGVHEIIFTMLASL 331

  Fly   249 SPTDGVEIISKIVDSPADVV-EFMQNLMHSPEDAIDIMNKF--------MNTPAEALRILNRILS 304
            ...|||    .|.:....:. ||:::|.....|.::...:|        ::....|:.|...|||
 Frog   332 MNKDGV----LIAEGQGFMTREFLKSLRKPFSDFMEPKFEFAIRFNGLELDDSDLAIFIAVIILS 392

  Fly   305 GGGANAAQQTADRKPLLDKEP 325
            |          ||..||:..|
 Frog   393 G----------DRPGLLNVGP 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 35/97 (36%)
NR_LBD 462..>573 CDD:472173
NR_LBD_F1 523..702 CDD:132727
ppargXP_031757160.1 PPARgamma_N 1..81 CDD:463633
NR_DBD_Ppar 110..193 CDD:143523 33/83 (40%)
NR_LBD_PPAR 209..474 CDD:132730 49/231 (21%)
Blue background indicates that the domain is not in the aligned region.

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