DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and nr1h5

DIOPT Version :9

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001107159.1 Gene:nr1h5 / 100135016 XenbaseID:XB-GENE-486722 Length:513 Species:Xenopus tropicalis


Alignment Length:373 Identity:87/373 - (23%)
Similarity:149/373 - (39%) Gaps:108/373 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQKCRLRKCLDIG 71
            |.||||||.||::||:|||.||.||||:......:.|....:|::.:..||.||:|||:||..:|
 Frog   131 CVVCGDKASGYHYNALTCEGCKGFFRRSITKNAVYRCKNGGHCEMDMYMRRKCQECRLKKCKAVG 195

  Fly    72 MKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHYSGSQD 136
            |.:|.:::|.       :.::.|.::...:|                   :|..||:.......|
 Frog   196 MLAECLLTEV-------QCKSKRLRKNCKQN-------------------NSMLSNVKVEDEGSD 234

  Fly   137 SQSCGSADSGANGCSGRQASSPGTQVNPLQMTAE--KIVDQIVSDPDRASQAINRLMRTQKEAIS 199
            |:...|.....     :.:|.|       ::|||  |::|.||:...:....::.|....:|:..
 Frog   235 SRHVSSTTKPT-----KLSSQP-------ELTAEECKLIDHIVTAHQKCGIPLDDLKIFLEESAD 287

  Fly   200 VMEKVISSQKDALRLVSHLIDY----PG-------DALKII------------SKFMNSPFNALT 241
            ..|......:.|:..|...:::    ||       |.:.::            ::..|.|....:
 Frog   288 PEEIFYHFSEAAVLHVQAFVEFTKRLPGFEMLDHEDQIALLKGSTVEAMLLRSAQIYNLPVMGCS 352

  Fly   242 VFTKFMSSPTDGVEIISKIVDSPADVVEFMQ----------NL-MHSPED----AIDIMNKFMNT 291
            :.|      |:|      :...|...|:|.|          :| .||.:|    ..|:..:|: |
 Frog   353 LQT------TEG------LARYPNHSVDFSQIQEFDRCPLYSLEAHSHQDVSTSTADLTEEFI-T 404

  Fly   292 PAEALRILNRILSGGGANAAQQT-----------ADRKPLLDKEPAVK 328
            |     :.....|.|..|..:..           :|| |||..:|.|:
 Frog   405 P-----LFKFFRSMGSLNVTEAEYALLSAVTVFFSDR-PLLQNKPHVE 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 36/90 (40%)
NR_LBD 462..>573 CDD:299703
NR_LBD_F1 523..702 CDD:132727
nr1h5NP_001107159.1 NR_DBD_FXR 128..211 CDD:143520 35/86 (41%)
NR_LBD 256..506 CDD:386099 40/210 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24082
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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