DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and nr1i2

DIOPT Version :9

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001091887.1 Gene:nr1i2 / 100038168 XenbaseID:XB-GENE-480112 Length:391 Species:Xenopus tropicalis


Alignment Length:740 Identity:129/740 - (17%)
Similarity:199/740 - (26%) Gaps:404/740 - (54%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PKNCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQKCRLRKCL 68
            ||.|..|||:|.||:|||:|||.||.||||....|.|.:|||..:|.|....||.||.|||:|||
 Frog    34 PKICRACGDRATGYHFNAMTCEGCKGFFRRAMKRKLQLSCPFQNSCVINKSNRRHCQACRLKKCL 98

  Fly    69 DIGMKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADSSSSNLDHYSG 133
            ||||:.|.|||  |:.:::|:....| |:||.|:..:                            
 Frog    99 DIGMRKELIMS--DEAVEQRRALIKR-KQRLAESPPE---------------------------- 132

  Fly   134 SQDSQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAINRLMRTQKEAI 198
                                   .|||.:.|.|.                               
 Frog   133 -----------------------PPGTSLTPEQQ------------------------------- 143

  Fly   199 SVMEKVISSQKDALRLVSHLIDYPGDALKIISKFMNSPFNALTVFTKFMSSPTDGVEIISKIVDS 263
                                                                             
 Frog   144 ----------------------------------------------------------------- 143

  Fly   264 PADVVEFMQNLMHSPEDAIDIMNKFMNTPAEALRILNRILSGGGANAAQQTADRKPLLDKEPAVK 328
                 .|:..|                               .||:.                  
 Frog   144 -----HFVTEL-------------------------------AGAHT------------------ 154

  Fly   329 PAAPAERADTVIQSMLGNSPPISPHDAAVDLQYHSPGVGEQPSTSSSHPLPYIANSPDFDLKTFM 393
                                                                         ||| 
 Frog   155 -------------------------------------------------------------KTF- 157

  Fly   394 QTNYNDEPSLDSDFSINSIESVLSEVIRIEYQAFNSIQQAASRVKEEMSYGTQSTYGGCNSAANN 458
                        ||:..|.::                                            
 Frog   158 ------------DFNFTSFKN-------------------------------------------- 166

  Fly   459 SQPHLQQPICAPSTQQLDRELNEAEQMKLRELRLASEALYDPVDEDLSALMMGDDRIKPDDTRHN 523
                                        .|.::.:|:...||.||             |..|...
 Frog   167 ----------------------------FRPIKRSSDPTQDPDDE-------------PQATSSG 190

  Fly   524 PKLL--QLINLTAVAIKRLIKMAKKITAFRDMCQEDQVALLKGGCTEMMIMRSVMIYDDDRAAWK 586
            ..|:  .:.:|....||.:|..||.:..|:.:..|||:|||||...|:.::|...::..:..:|:
 Frog   191 AFLMLPHISDLITYMIKGVISFAKMLPYFKSLNIEDQIALLKGSVVEVCVIRFNTMFVPETNSWE 255

  Fly   587 ---VPHTKENMGNIRTDLLKFAEGNIYEEHQKFITTFDEKWRMDENIIL------IMCAIVLFTS 642
               :.:..|:|     .:..|        .|.|:.......||...:.|      :|.|:.||.|
 Frog   256 CGPITYNTEDM-----TMAGF--------RQLFLEPLLRMHRMMRKLNLHNEEYALMAAMALFAS 307

  Fly   643 ARSRVIHKDVIRLEQNSYYYLLRRYLESVYSGCEA------RNAFIKLIQKISDVERLN----KF 697
            .|..|.....|:..|.....:|:||:|     |:.      |..:.|:::.::::..:|    |.
 Frog   308 DRPGVQDCKKIQNLQEHIALMLKRYIE-----CQRPLSPQNRLLYPKIMECLTELRTVNDIHSKQ 367

  Fly   698 IINVYLNVNPSQVEPLLREIFDLKN 722
            ::.:: ::.| ...|||||:|...|
 Frog   368 LLEIW-DIQP-DATPLLREVFGSHN 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 49/92 (53%)
NR_LBD 462..>573 CDD:299703 25/112 (22%)
NR_LBD_F1 523..702 CDD:132727 45/199 (23%)
nr1i2NP_001091887.1 NR_DBD_PXR 36..122 CDD:143536 46/87 (53%)
NR_LBD 138..385 CDD:299703 70/575 (12%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 100 1.000 Domainoid score I6900
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40757
Inparanoid 1 1.050 178 1.000 Inparanoid score I3912
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D153746at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24082
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6384
SonicParanoid 1 1.000 - - X988
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1010.100

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