DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr96 and rara

DIOPT Version :10

Sequence 1:NP_524493.1 Gene:Hr96 / 42993 FlyBaseID:FBgn0015240 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_031749796.1 Gene:rara / 100038052 XenbaseID:XB-GENE-480836 Length:463 Species:Xenopus tropicalis


Alignment Length:455 Identity:105/455 - (23%)
Similarity:176/455 - (38%) Gaps:122/455 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SPP------KNCAVCGDKALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVTRRFCQ 60
            |||      |.|.||.||:.||::....||.||.||||:......:||..::||.|..|||..||
 Frog    79 SPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQ 143

  Fly    61 KCRLRKCLDIGMKSENIMSEEDKLIKRRKIETNRAKRRLMENGTDACDADGGEERDHKAPADS-- 123
            .|||:||.::||..|::.::.:|    :|.|..:|.  :||:...:.:.:...|:..||..::  
 Frog   144 YCRLQKCFEVGMSKESVRNDRNK----KKKEPPKAD--VMESYVLSPETEDLIEKVRKAHQETFP 202

  Fly   124 SSSNLDHYSGSQDSQSCGSADSGANGCSGRQASSPGTQVNPLQMTAEKIVDQIVSDPDRASQAIN 188
            :...|..|:.:..|:...|.|                 ::.....:|.....|:...:.|.|...
 Frog   203 ALCQLGKYTTNFSSEERVSLD-----------------IDLWDKFSELSTKCIIKTVEFAKQLPG 250

  Fly   189 RLMRTQKEAISVMEKV------------ISSQKDALRLVSHLIDYPGDALKI-ISKFMNSPFNAL 240
            ....|..:.|::::..            .:..:|.:..        .|.|.: .::..|:.|..|
 Frog   251 FTTLTIADQITLLKSACLDILILRICTRYTPDQDTMTF--------SDGLTLNRTQMHNAGFGPL 307

  Fly   241 T--VF---TKFMSSPTDGVE--IISKIVDSPADVVEFMQNLMHSPEDAIDIMNKFMNTPAEALRI 298
            |  ||   .:.:....|..|  ::|.|.....|..:..|      .|.:|   |......|||:|
 Frog   308 TDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQ------PDKVD---KLQEPLLEALKI 363

  Fly   299 LNRILSGGGANAAQQTADRKPLLDKEPAVKP-------------AAPAERADTVIQSMLGNSPPI 350
            ..|              :|:|   |:|.:.|             |..|||..|:...:.|:.||:
 Frog   364 YVR--------------NRRP---KKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPL 411

  Fly   351 SPHDAAVDLQYHSPGV----------GEQPSTSSSHPLPYIANSPDFDLKTFMQTNYNDEPSLDS 405
                 ..::..:|.|:          |..|.|    |:|..:.||     :...::.:..||..|
 Frog   412 -----IQEMLENSEGLDTLGGGGGASGGAPPT----PVPPRSCSP-----SLSPSSTHSSPSTHS 462

  Fly   406  405
             Frog   463  462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr96NP_524493.1 NR_DBD_CAR 5..98 CDD:143524 38/92 (41%)
NR_LBD 462..>573 CDD:472173
NR_LBD_F1 523..702 CDD:132727
raraXP_031749796.1 NR_DBD_RAR 84..168 CDD:143522 35/87 (40%)
NR_LBD_RAR 188..418 CDD:132735 50/285 (18%)
Blue background indicates that the domain is not in the aligned region.

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