DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tnc and Leo1

DIOPT Version :9

Sequence 1:NP_001247300.1 Gene:tnc / 42990 FlyBaseID:FBgn0039257 Length:2819 Species:Drosophila melanogaster
Sequence 2:NP_001005548.1 Gene:Leo1 / 300837 RGDID:1549772 Length:678 Species:Rattus norvegicus


Alignment Length:784 Identity:149/784 - (19%)
Similarity:266/784 - (33%) Gaps:241/784 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1899 SEAGSTESSEEVKPSTEGEVAEKPEDKQPSSTAQAPVETIPEISTELPAQDGDKPTSEAPVDSDE 1963
            |||   ||..|.|.|..|..::..:|...|.:                    :...||:..|...
  Rat    10 SEA---ESEAERKDSDSGSDSDSDQDNGASGS--------------------NASGSESDQDERG 51

  Fly  1964 DTSAPSDEKIPSVSGEEVEGPEVTTASPQAAEEDELKTPA--------ESEPSSTDKVPETEYQK 2020
            |:..||::::.....|| ||....:.|...:|:.:.::.|        ::|||..|:...:|...
  Rat    52 DSGQPSNKELFGDDSEE-EGAPHHSGSDNHSEQSDNRSEASEERSDHEDNEPSDVDQHSGSEAHN 115

  Fly  2021 PEDETKADETPESVTQVSDVATSTS----APVAGGDIEK-DEQATTASPEEEEEIKPTIAPAAEI 2080
            .:|:...||..:.....||..:..|    :..|..|.|| |.:..:...:::|:::.:       
  Rat   116 DDDDDDDDEDDDDEGHRSDEGSHHSEAEGSEKAQSDDEKWDGEDKSDQSDDDEKLQNS------- 173

  Fly  2081 PQPSEKEPVDEQEVESGTKATPAESDGQPIDEIAPATSGPIDEASTAAPTKEESTTVASAASPAV 2145
                     |::|.|.|       ||.:.:...|       ||......|.:|.....|      
  Rat   174 ---------DDEEREQG-------SDDEKLQNSA-------DEEEKMQNTDDEDRAQLS------ 209

  Fly  2146 HDDEIKDVTTTQP--VADEKEVAAPQDETKTSIDVSTDSPTAQDDEKQDKTEAPVAPTTVSSPTA 2208
             ||:.:.::..:.  ..||:..|:..||.|.:.| ..|.|...|:||...               
  Rat   210 -DDDRQQLSEEEKGNSDDERPAASDNDEEKQNSD-DEDRPQVSDEEKMQN--------------- 257

  Fly  2209 DSAADSSTPTVEVPSPVEIDTKPMDDIMSQTIAPHTADGAASTSTEDEDQAPVTVSPQDAEKTPV 2273
               :|...|.|.     :.|.:..||                  .|::||...:....|:|...:
  Rat   258 ---SDDERPQVS-----DEDRRHSDD------------------EEEQDQKSESARGSDSEDEVL 296

  Fly  2274 -----SPAPQDSDKTPSSEAPQD----------ADEI----------PATATPLDDNKIPATVAP 2313
                 :..|.||:....:|.|:|          ||:|          |....|:|:|.:|..  .
  Rat   297 RMKRKNAIPSDSEVDSDTEVPKDNNGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQD--Q 359

  Fly  2314 QTDDGVPATAAPLDEDKIQTTAA-PLDEEKIPSTAAPLDDEKIPAPVSPVVFDVEPSSEKPAVSE 2377
            |.::.:|.|...::..|:.|... .|...|:|:.   |..|  |.|..|..::.|...|:....|
  Rat   360 QEEEPIPETRIEVEIPKVNTDLGNDLYFVKLPNF---LSVE--PRPFDPQYYEDEFEDEEMLDEE 419

  Fly  2378 --------------------YDGEESTEPPVHDVETS---------------------------- 2394
                                .:|.|..|.....|:.|                            
  Rat   420 GRTRLKLKVENTIRWRMRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLF 484

  Fly  2395 -------TDEPTSDAKL--KPPTSAPATPSE---------SPATEAEIVPETAA-PELEKEVPEK 2440
                   ..:.....||  :|.::..||..:         |...:..|:|.... ||.::  .|.
  Rat   485 IRQGTGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQR--TEM 547

  Fly  2441 ATEQPELEKETPEKATEQPELEKETPEKATEQPELEKETPEKATEQPELEKEVTDKA-------- 2497
            ..::.|..:.:..:.::|..:.::..::......||   |::..|:.|.|:.|:..|        
  Rat   548 IKKEEERLRASIRRESQQRRMREKQHQRGLSASYLE---PDRYDEEEEGEESVSLAAIKNRYKGG 609

  Fly  2498 ----------TEQPESVDEKTTPEPVVKPSLDSTEEDEESVESEEESADKKDKNKETEEDTDKKH 2552
                      ::..|..:|......:....|:|.||.|.|.:.:.|..||.:|..:....:|::.
  Rat   610 IREERARIYSSDSDEGSEEDKAQRLLKAKKLNSDEEGESSGKRKAEDDDKANKKHKKYVISDEEE 674

  Fly  2553 EEPE 2556
            ||.:
  Rat   675 EEDD 678

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tncNP_001247300.1 VWC 235..296 CDD:214564
PHA02664 <433..595 CDD:177447
Ehrlichia_rpt 529..1065 CDD:118064
DUF863 <1684..>1788 CDD:283539
VWC 2762..>2805 CDD:302663
Leo1NP_001005548.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..373 95/467 (20%)
PHA02664 <33..183 CDD:177447 35/193 (18%)
PHA02664 <134..259 CDD:177447 34/180 (19%)
Leo1 386..544 CDD:281933 25/162 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 559..596 7/39 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 613..678 15/64 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1181
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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