DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tnc and Dmp1

DIOPT Version :9

Sequence 1:NP_001247300.1 Gene:tnc / 42990 FlyBaseID:FBgn0039257 Length:2819 Species:Drosophila melanogaster
Sequence 2:XP_006250684.1 Gene:Dmp1 / 25312 RGDID:2508 Length:504 Species:Rattus norvegicus


Alignment Length:585 Identity:134/585 - (22%)
Similarity:215/585 - (36%) Gaps:150/585 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1474 ATFEPIESEFEVSTKKPAVQGPPLPTLAPAQPEKKPVDAETSTEADISTEPSA---EVEKEASGE 1535
            |.::..|||..........|.||           .|:::|:|.|:.:|.|..|   ..:...|||
  Rat    20 ARYQNTESESSEERTGNLAQSPP-----------PPMNSESSEESKVSPEGQANSDHTDSSESGE 73

  Fly  1536 TSESDNE--IDAGASSTPVPVSADEDKTPSTEKTVEADDKFTTVAPLAGDEEESNLPKLPQDIFE 1598
            ...||..  ..||..|....:.||:::    ::....||.|       |||:....|:..|    
  Rat    74 ELGSDRSQYRPAGGLSKSAGMDADKEE----DEDDSGDDTF-------GDEDNGPGPEERQ---- 123

  Fly  1599 EEAPVAVTTAAPSKDDGEQKPVEVEEKPIEDGQKPIEDETSTPTSSENEIEPESDRATTIAPSK- 1662
                    ...||:.|.:                  ||...|..|||:....|:....|.:.|| 
  Rat   124 --------WGGPSRLDSD------------------EDSADTTQSSEDSTSQENSAQDTPSDSKD 162

  Fly  1663 ----EEPSEPSTGAPTKDEPAEP-------------------STDAPESDESKETPESEVPTTVA 1704
                |..|.|..|..|:|..:|.                   ..:..:||:...|......|.::
  Rat   163 HHSDEADSRPEAGDSTQDSESEEYRVGGGSEGESSHGDGSEFDDEGMQSDDPGSTRSDRGHTRMS 227

  Fly  1705 PAGEKIPTSSITPDEEPTATSAPVAKPDEDVEKETSTEIPTDAPASSEEDE-----NSSTDQIPS 1764
            .||  |.:.....|.|||:|.    ..|:..:.|.|:.........||||:     :|::.:..|
  Rat   228 SAG--IRSEESKGDHEPTSTQ----DSDDSQDVEFSSRKSFRRSRVSEEDDRGELADSNSRETQS 286

  Fly  1765 EVPE---KKPETPAQTPEEGDIVGATAAPTTSDEVPPVQRLPEEVLAEIPQPSTETGIKQQDETT 1826
            :..|   .|.|:.::|.|:      ||...:.::.|..|....|...|..:||.|:..:.|:   
  Rat   287 DSTEDFRSKEESRSETQED------TAETQSQEDSPEGQDPSSESSEEAGEPSQESSSESQE--- 342

  Fly  1827 AAPSIDRKEPYVTEIDEEATTVAPISEKDEKPTEEEKPVEQKPTGEEPSEEEEKEKPIEQDVSTE 1891
                                .||..|..|       .|.....||::...|..:|..:....|:|
  Rat   343 --------------------GVASESRGD-------NPDNTSQTGDQRDSESSEEDRLNTFSSSE 380

  Fly  1892 GPVSTEASEAGSTESSEEVKPSTEGEVAEKPEDKQPSSTAQAPVETIPEISTELPAQDGDKPTSE 1956
            .. |||  |.|.:||:|.:..|.|.:.:.:.||    |::|..::: ...|.|..:|:     |:
  Rat   381 SQ-STE--EQGDSESNESLSLSEESQESAQDED----SSSQEGLQS-QSASRESRSQE-----SQ 432

  Fly  1957 APVDSDEDTSAPSDEKIPSVSGEEVEGPEVTTASPQAAEEDELKTPAESEPSSTDKVPETEYQKP 2021
            :..||..:.:..||.:..|.|.||..    :|.|..::|||  ..|...|..:...:.:..:.||
  Rat   433 SEQDSRSEENRDSDSQDSSRSKEESN----STGSTSSSEED--NHPKNIEADNRKLIVDAYHNKP 491

  Fly  2022  2021
              Rat   492  491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tncNP_001247300.1 VWC 235..296 CDD:214564
PHA02664 <433..595 CDD:177447
Ehrlichia_rpt 529..1065 CDD:118064
DUF863 <1684..>1788 CDD:283539 26/111 (23%)
VWC 2762..>2805 CDD:302663
Dmp1XP_006250684.1 DMP1 1..504 CDD:284637 134/585 (23%)
PHA02664 <112..195 CDD:177447 24/112 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1181
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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