DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mah and AVT4

DIOPT Version :9

Sequence 1:NP_651316.1 Gene:mah / 42988 FlyBaseID:FBgn0285912 Length:527 Species:Drosophila melanogaster
Sequence 2:NP_014298.1 Gene:AVT4 / 855622 SGDID:S000005045 Length:713 Species:Saccharomyces cerevisiae


Alignment Length:607 Identity:120/607 - (19%)
Similarity:227/607 - (37%) Gaps:185/607 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FRRQNAKPAPRPSRAPSFALPKRRPPVQLT-------PSHQH--------------DQLPFLRRS 47
            |||:             |.:.|:|...||.       .||:.              |::|||.|:
Yeast   191 FRRE-------------FIVNKKRQEHQLNDSASSDFTSHESDSINQSSPSSNQDIDKVPFLTRN 242

  Fly    48 RFSAL---PHF--RAYEDE--PENLSLFI-------AILYVVDLFGIFPFV-----TLPALLVKL 93
            ....|   .||  .::||:  |::.::.|       |:|...|...:.|..     |....|:.|
Yeast   243 FLEFLYVFGHFAGESFEDDFIPDSSNMMIRGEDERSALLSRPDHMKVLPSAKGTTSTKKVFLILL 307

  Fly    94 GYF---GIL----------LVLSIIILQIYTSFLLSQCWTMAELLDPSIQQKRNYPYAALAELA- 144
            ..|   |:|          |..|:.:|..   |.:...|....|    :|.|.:...::..::. 
Yeast   308 KSFIGTGVLFLPNAFHNGGLFFSVSMLAF---FGIYSYWCYYIL----VQAKSSCGVSSFGDIGL 365

  Fly   145 --YGPYMSLLVSVLLDLSIFAMAVPSVVMAAQNLEGV--------VLRMSAGQYNFSYCYWAIIV 199
              |||:|.:::...|.::....:...::..|:||:..        ||.:|         |..:..
Yeast   366 KLYGPWMRIIILFSLVITQVGFSGAYMIFTAKNLQAFLDNVFHVGVLPLS---------YLMVFQ 421

  Fly   200 GLVICPLMW------LGSPKHMRGLAIIAVCVMIVIVAL--LWFCLFAAPAIGTPFEGISLELPG 256
            .::..||.:      |..|..:....|:|..|:::|...  |:|.|...||:|..: |::.:.  
Yeast   422 TIIFIPLSFIRNISKLSLPSLLANFFIMAGLVIVIIFTAKRLFFDLMGTPAMGVVY-GLNADR-- 483

  Fly   257 FLTVLNSYSILAFQFDIHPVLLTLQIDMKQKSQVSWAALIGIAITCSVAIFGSI--IAAYKFGSM 319
             .|:....:|.||:    .:.|.:.:....::...:..::.:.|..:..:|.||  :....:||.
Yeast   484 -WTLFIGTAIFAFE----GIGLIIPVQDSMRNPEKFPLVLALVILTATILFISIATLGYLAYGSN 543

  Fly   320 IADNLLQSLPTS-------VPFYVMLILMA--LQLCFSVTVASSAMFMQIENYF----------- 364
            :...:|.:||.|       ..||.:.|:::  |||..::.:..:..|.:....:           
Yeast   544 VQTVILLNLPQSNIFVNLIQLFYSIAIMLSTPLQLFPAIKIIENKFFPKFTKIYVKHDDLTTRVE 608

  Fly   365 ------KLPESLSFKRMLIRSSVLALEVLVAEF-VPSFDALMDVVGGTITGPLVFILPPLLYRRI 422
                  ||...:.:.:..|||.::.:.|.:|.| ..:.|..:.|:|.....|||:|.|.:|:.| 
Yeast   609 LRPNSGKLNWKIKWLKNFIRSIIVIIVVSIAYFGSDNLDKFVSVIGSLACIPLVYIYPSMLHLR- 672

  Fly   423 RRMERVHQRIAAEASYGSLPLDLNYDPVDLEMEPLLVISPPTTPRGCWLRFVRLLHRLECDVSCT 487
                            |:                    |.|.|....| ||..:|..:       
Yeast   673 ----------------GN--------------------SLPETKGEFW-RFKPMLDTI------- 693

  Fly   488 MAVLIFGLLATFLSTYLNIFSL 509
              ::.||:.:...::|.:||.:
Yeast   694 --LIFFGIASMLYTSYQSIFGV 713

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mahNP_651316.1 SLC5-6-like_sbd 110..426 CDD:294310 72/363 (20%)
AVT4NP_014298.1 Aa_trans 295..711 CDD:279788 92/486 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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