DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssh and MSG5

DIOPT Version :9

Sequence 1:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster
Sequence 2:NP_014345.3 Gene:MSG5 / 855674 SGDID:S000004998 Length:489 Species:Saccharomyces cerevisiae


Alignment Length:541 Identity:122/541 - (22%)
Similarity:202/541 - (37%) Gaps:154/541 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 KENATAAGDNKNTSGMEESCLLGIDCNERTTIGLVVPILADTTIHLDGDGGFSVKVYEKT--HIF 246
            |.|:..:..|:||..      |.:|      |..:.|::..::...|..|  |||....|  ::|
Yeast    19 KPNSPRSLQNRNTKN------LSLD------IAALHPLMEFSSPSQDVPG--SVKFPSPTPLNLF 69

  Fly   247 ---KPVSVQ---AMWSALQTLHKVSKKARENNFYASGPSHDWLSSYERRIESDQSCLNEWNAMDA 305
               ||:.::   ...|...|...:|.:..|.:.|...      :|.:.|..| .|...:.:.:.:
Yeast    70 MKPKPIVLEKCPPKVSPRPTPPSLSMRRSEASIYTLP------TSLKNRTVS-PSVYTKSSTVSS 127

  Fly   306 LESRRPPSPDAIRNKPPEKEETESVIKMKLKAIMMSVDLDEVTSKYIRGRLEEI----------- 359
            :......||.:..::.|......|          :||...::..|.||||.:.|           
Yeast   128 ISKLSSSSPLSSFSEKPHLNRVHS----------LSVKTKDLKLKGIRGRSQTISGLETSTPISS 182

  Fly   360 -----LD-MDLGEYKS--------------------FIDAEMLVILGQMDAPTKIF-EHVYLGSE 397
                 || .|:..:.:                    .:.||:......:|.|..:. .::||.||
Yeast   183 TREGTLDSTDVNRFSNQKNMQTTLIFPEEDSDLNIDMVHAEIYQRTVYLDGPLLVLPPNLYLYSE 247

  Fly   398 WNASNLEELQKNGVRHILNVTREIDN---FFPGTFEYFNVRVYDDEKTNLLKYWDDTFRYITR-- 457
               ..||::....:  ::||.:||.|   ..|....: .::.|..|.|:..|...|..| :||  
Yeast   248 ---PKLEDILSFDL--VINVAKEIPNLEFLIPPEMAH-KIKYYHIEWTHTSKIVKDLSR-LTRII 305

  Fly   458 --AKAEGSKVLVHCKMGVSRSASVVIAYAMKAYQWEFQQALEHVKKRRSCIKPNKNFLNQLETYS 520
              |.::|.|:||||:.|||||||:::||.|:.|......|...:|.....|.||...:.||..:.
Yeast   306 HTAHSQGKKILVHCQCGVSRSASLIVAYIMRYYGLSLNDAYNKLKGVAKDISPNMGLIFQLMEWG 370

  Fly   521 GML-----------------DAMKNKEKLQRSKS-----------ETNLKSTKDARLLPGSEPTP 557
            .||                 |.:.|.|....:||           .|||.|:.:...:..||.||
Yeast   371 TMLSKNSPGEEGETVHMPEEDDIGNNEVSSTTKSYSSASFRSFPMVTNLSSSPNDSSVNSSEVTP 435

  Fly   558 LIQA-LNQAKSKSTGEAGVTPDGEEEDGSRMHRRSIAQKSQRRMVRRSSSTSPKTQTAVVTKQQS 621
            ...| |..|::     |..|..||:::    |.:|::                         |.:
Yeast   436 RTPATLTGART-----ALATERGEDDE----HCKSLS-------------------------QPA 466

  Fly   622 QSMENLTPERSVAEEPKNMRF 642
            .|:|......|::..|:.|.|
Yeast   467 DSLEASVDNESISTAPEQMMF 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sshNP_733063.1 SSH-N 21..313 CDD:212166 27/136 (20%)
DEK_C 328..379 CDD:285919 14/87 (16%)
DSPc 385..519 CDD:238073 46/141 (33%)
MSG5NP_014345.3 DSP_fungal_SDP1-like 230..373 CDD:350371 47/149 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1716
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4509
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2281
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.790

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