DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssh and Dusp10

DIOPT Version :9

Sequence 1:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster
Sequence 2:NP_001099204.1 Gene:Dusp10 / 63995 RGDID:1310844 Length:482 Species:Rattus norvegicus


Alignment Length:515 Identity:117/515 - (22%)
Similarity:204/515 - (39%) Gaps:115/515 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LVLALKDIPPLTQSERRLSTDSTRSSNSTQSNNSDIQLHLQSMFYLLQREDTLKMA---VKLESQ 109
            :|:||.  .|:...:..|..||:...:::..:|:...:...::.       |||.|   ....|.
  Rat    10 VVVALS--RPVRPQDLNLCLDSSYLGSASPGSNNHTPVIATAVV-------TLKAANLTYMPSSS 65

  Fly   110 RSNRTRYLVIASRSCCRSGTSDRRRHRIMRHHSVK----VGGSAGTKSSTSPAVPTQRQLSVEQT 170
            .|.|:.....:|.|||...|.|       :.|..:    ..|:|.|...||...|..:.::    
  Rat    66 GSARSLNCGCSSTSCCTVATYD-------KDHQAQTQAIAAGTATTAIGTSTTCPANQMVN---- 119

  Fly   171 ATEASSKCDKTADKENATAAGDNKNTSGMEESCLLGIDCN----ERTTIGLVVP------ILADT 225
                                 :|:|...:..|..:|...:    :..:|.::.|      :...:
  Rat   120 ---------------------NNENIGSLSPSGGVGSPVSGTPKQLASIKIIYPNDLAKKMTKCS 163

  Fly   226 TIHLDGDGGFSVKV-----YEKTHIFKPVSV---------QAMWSALQTLHKVSKKARENNFYAS 276
            ..||...|...:..     |.|:||...|.:         :.....:..|..:|.:..:::|   
  Rat   164 KSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSF--- 225

  Fly   277 GPSHDWLSSYERRIESDQSCLNEWNAMDALESRRPPS-PDAIRNKPPEKEETES-VIKMKLKAIM 339
                       :||.|.:..:.:.|..:  .||..|| |..|..:..::|..|. |:|..|.:..
  Rat   226 -----------KRIFSKEIIVYDENTNE--PSRVTPSQPLHIVLESLKREGKEPLVLKGGLSSFK 277

  Fly   340 M--------SVDLDEVTSKYIRG---RLEEILDMDLGEYKSFIDAEMLVILGQMDAPTKIFEHVY 393
            .        |:.|.|  .:.:.|   ....:|...:........||:          |.|...::
  Rat   278 QNHGNLCDNSLQLQE--CREVGGGASAASSVLPQSVPSTPDIESAEL----------TPILPFLF 330

  Fly   394 LGSEWNASNLEELQKNGVRHILNVTREID--NFFPGTFEYFNVRVYDDEKTNLLKYWDDTFRYIT 456
            ||:|.:|.:|:.:|:..|.:::|||..:.  ::..|.|.|..:...|..|.||.:|:::.|.:|.
  Rat   331 LGNEQDAQDLDAMQRLNVGYVINVTTHLPLYHYEKGLFNYKRLPATDSNKQNLRQYFEEAFEFIE 395

  Fly   457 RAKAEGSKVLVHCKMGVSRSASVVIAYAMKAYQWEFQQALEHVKKRRSCIKPNKNFLNQL 516
            .|...|..:|:||:.||||||::||||.||..:.....|.:.||.:|..|.||.||:.||
  Rat   396 EAHQCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPIISPNLNFMGQL 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sshNP_733063.1 SSH-N 21..313 CDD:212166 51/295 (17%)
DEK_C 328..379 CDD:285919 11/62 (18%)
DSPc 385..519 CDD:238073 50/134 (37%)
Dusp10NP_001099204.1 DSP_MapKP 149..284 CDD:238723 27/150 (18%)
DSP_DUSP10 322..473 CDD:350415 50/144 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1716
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1576308at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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