DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssh and ssh1b

DIOPT Version :9

Sequence 1:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster
Sequence 2:XP_021332184.1 Gene:ssh1b / 567479 ZFINID:ZDB-GENE-030131-5909 Length:962 Species:Danio rerio


Alignment Length:1081 Identity:338/1081 - (31%)
Similarity:479/1081 - (44%) Gaps:248/1081 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 GESEDDEGNSKGN-DRSECFFAGKGTALVLALKDIPPLTQSERRLSTDSTRSSNSTQSNNSDIQL 85
            ||....|.:.|.| ..||.||..||.||.|           ::..|....|:. :...|..|:..
Zfish    23 GEDVGSEDDRKANLSLSESFFMVKGAALFL-----------QQGSSAQEPRTP-THHKNAGDLPQ 75

  Fly    86 HLQSMFYLLQREDTLKMAVKLESQRSNRTRYLVIASRSCCRSGTSDRRRHRIMRHHSVKVGGSAG 150
            |||.|...|:.||.:|:.|:|||..::..||:|:                       |...|...
Zfish    76 HLQVMINTLRSEDRIKLVVRLESGWTDHVRYMVV-----------------------VYTNGRQD 117

  Fly   151 TKSSTSPAVPTQRQLSVEQTATEASSKCDKTADKENATAAGDNKNTSGMEESCLLGIDCNER--- 212
            |                                                ||:.|||:|..::   
Zfish   118 T------------------------------------------------EENILLGMDFTDKDSK 134

  Fly   213 -TTIGLVVPILADTTIHLDGDGGFSVKVYEKTHIFKPVSVQAMWSALQTLHKVSKKARENNFYAS 276
             .:||:.:|:.:||.|||||||||||....:.|:||||||||||||||.|||..:.:|..|::..
Zfish   135 SCSIGMTLPLWSDTKIHLDGDGGFSVSTAGRLHVFKPVSVQAMWSALQVLHKACEVSRRYNYFPG 199

  Fly   277 GPSHDWLSSYERRIESDQSCLNEWNAMDALESRRPPSPDAIRNKPPEKEETESVIKMKLKAIMMS 341
            |.:..|:..||..|.|:|||:||||||..||:.||.||....::|.|:|.||.:||.||:.:||.
Zfish   200 GMALTWVGYYESCISSEQSCINEWNAMTDLETTRPDS
PVMFSDQPTERERTECMIKTKLRNLMMF 264

  Fly   342 VDLDEVTSKYIRGRLEEILDMDLGEYKSFIDAEMLVILGQMDAPTKIFEHVYLGSEWNASNLEEL 406
            .||:.:|||.||..||:.:..:|.|||.|||.|||:||||||..|.||:|:||||||||||||||
Zfish   265 QDLENITSKEIRNELEQHMSCNLREYKEFIDNEMLLIL
GQMDKATLIFDHLYLGSEWNASNLEEL 329

  Fly   407 QKNGVRHILNVTREIDNFFPGTFEYFNVRVYDDEKTNLLKYWDDTFRYITRAKAEGSKVLVHCKM 471
            |.:||.:||||||||||||||||.|.||||||||.|:||.:|::|:.:|.|||...||.||||||
Zfish   330 QDSGVGYILNVTREIDNFFPGTFCYCNVRVYDDETTDLLAHWNETYNFIVRAKKNDSKCLVHCKM 394

  Fly   472 GVSRSASVVIAYAMKAYQWEFQQALEHVKKRRSCIKPNKNFLNQLETYSGMLDAMKNK-EKLQRS 535
            |||||||.|||||||.|.|..::|...||::|:..:||..|:.||..|.|:|||.|.: .||.:.
Zfish   395 GVSRSASTVIAYAMKEYGWSLEKAYNFVKQKRNIAQPNPAFMKQLAEYEGILDASKQRHNKLWKP 459

  Fly   536 KSETNLKSTKDARLLPGSEPTPLIQALN---QAKSKSTGEAGVTPDGEEEDGSRMHRRSIAQKSQ 597
            ..:........|....|.: ||....|:   :.::...|.|..:|...||....::.....::..
Zfish   460 DGDEYSPEGLQASAASGDQ-TPQFSLLHPDQEERAWGHGGASASPCCGEEPTDHLNYNYYFRRLS 523

  Fly   598 RRMVRRSSSTSPKTQTAVVTKQQSQSMENLTPERSVAEEPKNMRFPGSNGENYSVTQNQVLHIQK 662
            ...:....||..:....:..::....:|::..:..:.:|...|...|..||..:......|.   
Zfish   524 DTALDSEPSTPVRGPPLLGMERVFIEIEDVERDALLDDEGFPMAHLGLPGEGTAAQTCGRLE--- 585

  Fly   663 HTPL-SVRTRIHDLEAHRADQLPQQPVWTSLTKLI--TQTSHLGKSVSGSSSGNIDSRRDS---- 720
              || .:|.|:........|:...|.....:..|.  .:|....:|::.|:..|.::..:|    
Zfish   586 --PLEDMRLRLEFSTVEEEDEEEAQKEEAEMAALARGEETPREDESLANSNRFNNENANNSNRLA 648

  Fly   721 ---SCSDVF--SSQVDSVF--------AKD-----EGEKRQRRK------THSWTESLG--PSGG 759
               ||...|  |:.:.:.|        .:|     .|.:.:||.      .|:...|:.  ..||
Zfish   649 GKRSCPSGFDDSASIGNPFKVKPSYQSCRDCLRLPSGRRCERRNHRLNLPRHTGLPSISIQAPGG 713

  Fly   760 IVLDPTPQQQKQQSNAILRPRGTRQRELPSRHASWGSGDNRCCLPQRTSSGSYYDSNRNTTAIFE 824
            :...|.      ..|.:..|       :|..|.|  ||..:|.   |.||....|:.|...:   
Zfish   714 LKFRPV------SINKVPPP-------VPLHHMS--SGHCQCF---RCSSRVNLDTYRKQRS--- 757

  Fly   825 GVIQDLKRSSNCNVIEGVAVAVEPIVGVGEGTVKRTKQKLEESTSLK------KRCQEESQELLL 883
              .:||.:     |:.......:.:.|..||:...:.....|.|.||      :...|.||...|
Zfish   758 --CKDLPQ-----VLPYSLETEDKMEGEDEGSKGSSSSPTAELTLLKLSLGGERPAAELSQGPHL 815

  Fly   884 EA------------------------VDAG-------------QRRCP---SLYRSASSAHSPRQ 908
            :|                        ||.|             |:|.|   ||.||:||....|.
Zfish   816 DAQHRPEPLSEQMDVSVEDSTTEDMEVDEGNIIPYVHPSSSELQQRSPPGMSLVRSSSSDSLQRV 880

  Fly   909 R--QP--LRCNSEELMHTSDIENKNTTPGDHEATVVLRVQGQTLADDQRISGNVQILKQNFEAKA 969
            |  ||  :|      ..|.:||.:            :|:.|.|::.        |:.:.|..||.
Zfish   881 RRVQPGLVR------QRTREIETR------------VRLAGLTVSS--------QLKRSNSLAKL 919

  Fly   970 GVVGTGGGGGGGTAAGSGSSSTIATSVS------AVAGACS 1004
            |.:..       :......|:|::|...      .|..:||
Zfish   920 GDLAI-------STEDLSLSATVSTDYDEQEPALCVQSSCS 953

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sshNP_733063.1 SSH-N 21..313 CDD:212166 97/295 (33%)
DEK_C 328..379 CDD:285919 26/50 (52%)
DSPc 385..519 CDD:238073 88/133 (66%)
ssh1bXP_021332184.1 SSH-N 3..236 CDD:212166 97/295 (33%)
DEK_C 244..302 CDD:312337 30/57 (53%)
DSPc 307..443 CDD:238073 88/135 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 200 1.000 Domainoid score I2983
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 414 1.000 Inparanoid score I1810
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1576308at2759
OrthoFinder 1 1.000 - - FOG0002581
OrthoInspector 1 1.000 - - otm25466
orthoMCL 1 0.900 - - OOG6_104189
Panther 1 1.100 - - O PTHR45864
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.970

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