DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssh and si:ch211-121a2.2

DIOPT Version :10

Sequence 1:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster
Sequence 2:NP_001098581.1 Gene:si:ch211-121a2.2 / 564515 ZFINID:ZDB-GENE-070705-21 Length:449 Species:Danio rerio


Alignment Length:339 Identity:88/339 - (25%)
Similarity:134/339 - (39%) Gaps:95/339 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 IESDQSCLNEWNAMDALESRRPPSPDAIRNKP-PEKEETESVIKMKLKAIMMSVDLDEVTSKYI- 352
            |....|.:.|.|.  ..|:...|:.:.....| |.....||.||.:|..:.|          || 
Zfish     9 IGKSSSAITEKNT--PTETEVDPADEGASCLPGPSCSNIESQIKTELSLLEM----------YIP 61

  Fly   353 ------RGRLEE-ILDMDLGEYKSFIDAEMLVILGQMDAP-TKIFEHVYLGSEWNASNLEELQKN 409
                  |.||:| .||.                     .| |:::.:|:||:|..|.:...|:..
Zfish    62 HGPGKLRNRLKECALDW---------------------TPVTEVWPNVFLGNEETALDRAMLKTM 105

  Fly   410 GVRHILNVTR-EID---NFFPGTFE-------YFNVRVYDDEKTNLLKYWDDTFRYITRAKAE-G 462
            |:.||||... |:|   |..|....       |:||...|::..::.:|:.....:|.:|.:. .
Zfish   106 GITHILNAAEIEVDLHANIIPRELHYQGMDITYYNVPALDEDMFDISEYFFPAAEFINKALSNPE 170

  Fly   463 SKVLVHCKMGVSRSASVVIAYAMKAYQWEFQQALEHVKKRRSCIKPNKNFLNQLETYSGML---D 524
            :||||||..||||||::.:||.|..:....:.|::||...| .|.||..||.||...:..|   .
Zfish   171 NKVLVHCVQGVSRSATLFLAYLMIQHDIMVENAIDHVTGVR-WISPNMGFLKQLTALNSTLVEKR 234

  Fly   525 AMKNKEKLQRSKSET----------------------------NLKSTKDARLLP----GSEPTP 557
            .::.:|:|:|...:|                            .|..|....:.|    |.|.| 
Zfish   235 KLQLREQLKRGNEDTEKPIPEPQESKQRIEETVIHLKHCLQKCTLDQTSATEVWPSVVIGDEHT- 298

  Fly   558 LIQALNQAKSKSTG 571
               |:::||.|..|
Zfish   299 ---AMDRAKLKQRG 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sshNP_733063.1 SSH-N 21..313 CDD:212166 5/22 (23%)
DEK_C 326..379 CDD:462592 14/60 (23%)
DSP_slingshot 385..523 CDD:350363 50/150 (33%)
si:ch211-121a2.2NP_001098581.1 DUSP3-like 81..230 CDD:350365 49/149 (33%)
DUSP3-like 284..445 CDD:350365 9/30 (30%)

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