DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssh and Styxl2

DIOPT Version :10

Sequence 1:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster
Sequence 2:NP_001178858.1 Gene:Styxl2 / 498267 RGDID:1560598 Length:1137 Species:Rattus norvegicus


Alignment Length:994 Identity:203/994 - (20%)
Similarity:361/994 - (36%) Gaps:248/994 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   291 ESDQSCLNEWNAMD--ALESR--RPPSP-------DAIRNKPPEKEETES--------------- 329
            |.:|...||.:..|  |:::.  |.|||       ||         ||||               
  Rat     8 EEEQVVPNEEDEADVRAVQAHYLRSPSPSQYSVVSDA---------ETESIFMEPIHLSSAVAAK 63

  Fly   330 -VIKMKLK-----------AIMMSVDLDEVTSKYIRGRLEEILDMDLGEYKSFIDAEMLVILGQM 382
             :|..:||           .::.|.:...|...|.|.| |::.|..|......:|.:..:|..:.
  Rat    64 QIINEELKPRGLRTDTECPGMLESAEQLLVEDLYNRVR-EKMDDKSLFNTPCVLDLQRALIQDRQ 127

  Fly   383 DAP----TKIFEHVYLGSEWNASNLEELQKNGVRHILNVTREI-----DNFFPG-TFEYFNVRVY 437
            :||    .:::.:|::..:..|.|...|::.|:.||||.....     ..|:.| ..:|..|.|.
  Rat   128 EAPRNEVDEVWPNVFIAEKSVAVNKGRLKRLGITHILNAAHGTGVYTGPEFYTGLEIQYLGVEVD 192

  Fly   438 DDEKTNLLKYWDDTFRYITRA-KAEGSKVLVHCKMGVSRSASVVIAYAMKAYQWEFQQALEHVKK 501
            |..:.::.:::.....::..| .....||||..:||:||||.:|:||.|..:.....:||..|::
  Rat   193 DFPEVDISQHFRKAAEFLDEALLTYRGKVLVSSEMGISRSAVLVVAYLMIFHNMAILEALMTVRR 257

  Fly   502 RRSCIKPNKNFLNQLETYSGMLDAMKNKEKL--QRSKSETNLKSTKDARLLPGSEPTPLI----- 559
            :|: |.||..||.||...:         |||  :|.:.:...:..:||....|:....|:     
  Rat   258 KRA-IYPNDGFLKQLRELN---------EKLMEEREEEDDEEEPEEDAGSTLGARVNSLMVEEED 312

  Fly   560 QALNQAKSKSTGEAG-----VTPDGEEEDGSRMHRRSIAQKSQRRMVRRSSSTSPKTQTAVVTKQ 619
            .|.:.....|.|:|.     ||...|||: .|::..   .:..:...:..:|...|...:..::|
  Rat   313 DATSHLSGSSLGKASQVSQPVTLIDEEEE-ERLYEE---WRKGQGFPKAEASQGRKGSCSASSEQ 373

  Fly   620 QSQSMENLTPERSVAE-EPKNMRFPGS-----NGENYSVTQNQVLHIQKHTPLSVRTRIHDLEAH 678
            .....|:...||.:.| :.:|.|:...     |.|.....:|.....::...||..:....:.:|
  Rat   374 DGDDCEDGAVERIIQEWQSRNERYQAKGHKQWNREEDEEEENSYTSRRRRHTLSESSASESVSSH 438

  Fly   679 RADQLPQQPVWTSLTKLITQTSHLGKSVSGSSSGNIDSRRDSSCSDVFSSQVDSVFAKDEGEKRQ 743
            ....|.||      .|..:|:.|        .....||....|..|:::.::..:      ||..
  Rat   439 DIRVLKQQ------LKRTSQSRH--------DRHRSDSESTESTWDMWNERLVEI------EKEA 483

  Fly   744 RRKTHSWTESLGPSGGIVLDPTPQQQKQQSNAILRPRGTRQRELPSRHASWGSGDNRCCLPQRTS 808
            .||..|.::.             ::....|.|     |:|.||          .|....|.:.:|
  Rat   484 ARKYRSKSKR-------------EELDADSEA-----GSRVRE----------DDEESVLSEASS 520

  Fly   809 SGSYYDSNRN-TTAIFEGVIQDLK---RSSNCNVIEGVAVAVEPIVGVGEGTVKRTKQKLEESTS 869
            ..::...|:: .||:....::.::   ...:..|::         .|..:||.:.|.:|.....:
  Rat   521 FYNFCSRNKDKLTALERWKVKRIQFGFHKKDSEVVD---------AGSEDGTEEATGEKNLSDVN 576

  Fly   870 LKKRCQEESQELLLEAVDAGQRRCPSLYRSASSAHSPRQRQPLRCNSEELMHTSDIENKNTTPGD 934
            |                        :.|::....|   |::....|.||::..|..|:.......
  Rat   577 L------------------------TAYQAWKLKH---QKKVGNENKEEVVEMSKGEDTALAKKR 614

  Fly   935 HEATVVLRVQGQTLADDQRISGNVQILKQNFEAKAGVVGTGGGGGGGTAAGSGSSS---TIATSV 996
            .....:|....||| ::.|..|:.:                  |...||:.|...|   :.|.||
  Rat   615 QRRLELLERSRQTL-EESRSMGSWE------------------GDSSTASRSIPLSAFWSAAPSV 660

  Fly   997 SAVAGACSANPGKKTTSHQS----------LPSSPVAQHANHVSAASNSNSSASNSSDSSVSENC 1051
            |......|....:...||.|          ||:.||.. .:.:|.||..|..|     |.|:|..
  Rat   661 SVDGDTASVLSAQSQHSHLSQPASNMPTTPLPNLPVGP-GDTISIASIQNWIA-----SVVNETL 719

  Fly  1052 DRNVKGLVHKYQTTTSCSSQAAATPTVAC--------------APLPPAGTASNISHSCSTTTTT 1102
            .:....::...:..:..|.:||  |..:|              ..|||.......|...|..::|
  Rat   720 AQKQNEMLTLSRAPSVASMRAA--PAASCLGDDQLSVLSTSLSGCLPPQSQGRPSSDVQSVLSST 782

  Fly  1103 SFKQRPLSYYDRSLSNRSTHDYSDSRPPPAPVRVSHSSNVQ----HQQQQQQQLQPEQHQQQVQI 1163
            |           ||::|:....:..|....|:....:.||.    .:::::.|::.::...:.::
  Rat   783 S-----------SLTSRAEGSENKVRGTSKPIYSLFADNVNLKELGRKEKEMQMELQEKMSEYKM 836

  Fly  1164 RRLAQHGKTHPLSRLSAPK 1182
            .:||...|...|.:....|
  Rat   837 EKLASDNKRSSLFKKKKAK 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sshNP_733063.1 SSH-N 21..313 CDD:212166 7/25 (28%)
DEK_C 326..379 CDD:462592 16/79 (20%)
DSP_slingshot 385..523 CDD:350363 42/148 (28%)
Styxl2NP_001178858.1 DSP_iDUSP27 124..279 CDD:350424 45/164 (27%)

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