DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssh and dusp19b

DIOPT Version :9

Sequence 1:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster
Sequence 2:NP_998144.1 Gene:dusp19b / 406252 ZFINID:ZDB-GENE-040502-1 Length:205 Species:Danio rerio


Alignment Length:161 Identity:57/161 - (35%)
Similarity:84/161 - (52%) Gaps:19/161 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   360 LDMDLGEYKSFIDAEMLVILGQMDAPTKIFEHVYLGSEWNASNLEELQKNGVRHILNVTREIDNF 424
            ||:.:|....|    :|:.....||               |.:::.|:|..|.|:|||...::|.
Zfish    62 LDLQVGIITPF----LLLCAASQDA---------------AHDIDTLKKLKVTHVLNVAFGVENV 107

  Fly   425 FPGTFEYFNVRVYDDEKTNLLKYWDDTFRYITRAKAEGSKVLVHCKMGVSRSASVVIAYAMKAYQ 489
            ||..|.|..|.:.|..:|::..|:.:.|.:||:|:.:...|||||..||||||||||.:.|...:
Zfish   108 FPELFTYKTVSMLDLPETDITAYFPECFEFITQARQQDGVVLVHCNAGVSRSASVVIGFLMSELK 172

  Fly   490 WEFQQALEHVKKRRSCIKPNKNFLNQLETYS 520
            ..|.:|....|..|..|:||..||.||:||:
Zfish   173 MSFDEAFSVAKTSRPQIQPNPGFLQQLKTYN 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sshNP_733063.1 SSH-N 21..313 CDD:212166
DEK_C 328..379 CDD:285919 5/18 (28%)
DSPc 385..519 CDD:238073 48/133 (36%)
dusp19bNP_998144.1 DSPc 65..203 CDD:238073 54/156 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1576308at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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