DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssh and CG10089

DIOPT Version :9

Sequence 1:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster
Sequence 2:NP_001261803.1 Gene:CG10089 / 39517 FlyBaseID:FBgn0036369 Length:447 Species:Drosophila melanogaster


Alignment Length:452 Identity:101/452 - (22%)
Similarity:171/452 - (37%) Gaps:69/452 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   387 KIFEHVYLGSEWNASNLEELQKNGVRHILNVTREIDNFFPGTFEYFNVRVYDDEKTNLLKYWDDT 451
            |:...:|:|:..::.:..:|::..:.||:.:........|.. .|..|...|....||.:|:...
  Fly     7 KVLPGLYVGNYRDSKDHAQLERFKISHIIAIHDSPRRLLPDK-HYLCVMASDTPDQNLSQYFSVC 70

  Fly   452 FRYITRAKAEGSKVLVHCKMGVSRSASVVIAYAMKAYQWEFQQALEHVKKRRSCIKPNKNFLNQL 516
            ..:|..|:.....||:||..|:|||.:|.:||.|.|....:::||:.|:..|:...||..|.:||
  Fly    71 NDFIHAARLREGNVLIHCLAGMSRSVTVAVAYIMTATHLNWKEALKVVRAGRAVANPNAGFQSQL 135

  Fly   517 ETYSGMLDAMKNKEKLQR------SKSETNLKSTKDARLLPGSEPTPLIQ-------ALNQAKSK 568
            :.:    :..|..|:.:|      |.:...|..||.|..|...:  .|:|       ..::.:..
  Fly   136 QEF----EQFKLSEERRRLRERFPSSALEQLDRTKVATALDNYQ--ELLQNRDICEGNCSRGEKC 194

  Fly   569 STGEAGVTPD----GEEEDGSRMHRRSIAQKSQRR----------MVRRSSSTSPKTQTAVVTKQ 619
            .||...:.|.    ......:..|.|..||.|...          ...:|..||||.....:.: 
  Fly   195 PTGVCNMDPTKGLFRRRPSNASTHSRLRAQSSNANASSSSLSVSSAAAQSCPTSPKNSPLPIVR- 258

  Fly   620 QSQSMENLTPERSVAEEPKNMRFPGS-----------NGENYSVTQNQVLHIQKHTPLSVRT--- 670
            :|...|.:..:..|.|:|.......:           ..|...:.|.|.|...:.:|..|.:   
  Fly   259 RSVGNERIPEDEIVLEQPPTTSREAAEYAAAFEDARREQEQRQLQQQQQLSRSQRSPRPVNSSRE 323

  Fly   671 --RIHDLEAHRADQLPQQPVWTSLTKLITQTSHLGKSVSGSSSGNIDSRRDSSCSDVFSSQVDSV 733
              |:....:.|.....:......|.:..:..|..|.....|.:| :.:...|..|.|..|:||..
  Fly   324 APRVSSAGSRRESAAREGNGSAQLQRSASTVSGFGVRPRSSPAG-LHAYTGSVPSSVHGSRVDLR 387

  Fly   734 FAKDEGE------KRQRRKTHSWTESLGPSGGIVLDPTP---------QQQKQQSNAILRPR 780
            .| |:|.      ...|..|.|.:.|.|.|||.. .|:|         ...|:.::.:.:||
  Fly   388 DA-DKGSAIYLGCSAPRASTLSISSSRGSSGGSA-PPSPCHTPPASPRHGVKRSTSLVKKPR 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sshNP_733063.1 SSH-N 21..313 CDD:212166
DEK_C 328..379 CDD:285919
DSPc 385..519 CDD:238073 37/131 (28%)
CG10089NP_001261803.1 DSPc 4..139 CDD:238073 37/136 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462484
Domainoid 1 1.000 44 1.000 Domainoid score I728
eggNOG 1 0.900 - - E2759_KOG1716
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1576308at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.750

Return to query results.
Submit another query.