DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssh and ssh2a

DIOPT Version :9

Sequence 1:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster
Sequence 2:XP_005157728.1 Gene:ssh2a / 325085 ZFINID:ZDB-GENE-030131-3810 Length:1175 Species:Danio rerio


Alignment Length:1352 Identity:402/1352 - (29%)
Similarity:562/1352 - (41%) Gaps:416/1352 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 SECFFAGKGTALVLALKDIPPLTQSERRLSTDSTRSSNSTQSNNSDIQLHLQSMFYLLQREDTLK 101
            ||.|...||.||.        |.:.....|:.:.|.......:..|:|.|||:||.||:.|||::
Zfish    45 SENFLTVKGAALF--------LPRGNGSSSSSAPRIPQRRNKHTGDLQQHLQTMFTLLRPEDTIR 101

  Fly   102 MAVKLESQRSNRTRYLVIASRSCCRSGTSDRRRHRIMRHHSVKVGGSAGTKSSTSPAVPTQRQLS 166
            :||:|||..:.||||:||.|    .:|..|                                   
Zfish   102 LAVRLESAYAVRTRYMVIIS----TNGRQD----------------------------------- 127

  Fly   167 VEQTATEASSKCDKTADKENATAAGDNKNTSGMEESCLLGIDC--NERT-TIGLVVPILADTTIH 228
                                            .|||.:||:|.  ::|| |:|||:|:.:||.||
Zfish   128 --------------------------------TEESVVLGMDFSNSDRTCTVGLVLPLWSDTLIH 160

  Fly   229 LDGDGGFSVKVYEKTHIFKPVSVQAMWSALQTLHKVSKKARENNFYASGPSHDWLSSYERRIESD 293
            |||||||||....:.|:||||||||||||||:||||.:.||.:|:|.......|:|.|:.|:.||
Zfish   161 LDGDGGFSVSTVNRVHVFKPVSVQAMWSALQSLHKVCEVARCHNYYPGSLFLTWVSYYQSRVTSD 225

  Fly   294 QSCLNEWNAMDALESRRPPSPDAIRNKPPEKEETESVIKMKLKAIMMSVDLDEVTSKYIRGRLEE 358
            |.|:||||||..::|.|..||....:.|.|:|.||.:||.:|:.|||..||:.||||.||..||.
Zfish   226 QHCINEWNAMQDVQSHRADS
PVLFTDVPTERERTERLIKTRLREIMMQKDLENVTSKEIRTELEM 290

  Fly   359 ILDMDLGEYKSFIDAEMLVILGQMDAPTKIFEHVYLGSEWNASNLEELQKNGVRHILNVTREIDN 423
            .:..:|.|:|.|||.||:|||||||:||:||:|||||||||||||||||.:|||:||||||||||
Zfish   291 QMVCNLREFKEFIDNEMIVIL
GQMDSPTEIFDHVYLGSEWNASNLEELQNSGVRYILNVTREIDN 355

  Fly   424 FFPGTFEYFNVRVYDDEKTNLLKYWDDTFRYITRAKAEGSKVLVHCKMGVSRSASVVIAYAMKAY 488
            ||||.|||.|:||||:|.||||:||:||:::|::||..|.|.|||||||||||||.|||||||.|
Zfish   356 FFPGLFEYHNIRVYDEEATNLLEYWNDTYKFISKAKKAGVKCLVHCKMGVSRSASTVIAYAMKEY 420

  Fly   489 QWEFQQALEHVKKRRSCIKPNKNFLNQLETYSGMLDAMKNK-EKLQRSKSETNLKSTKDARLLPG 552
            .|:..:|.:|||:|||..|||.:|:.|||.|.|:|.|.|.: .||.||.|:|:|..        |
Zfish   421 GWDLDRAFDHVKERRSVTKPNPSFMKQLEEYQGILLASKQRHNKLWRSHSDTDLSD--------G 477

  Fly   553 SEP---TPLIQALNQAKSKSTGEAGVTPDGEEEDGSRMHRRSIAQKSQRRMVRRSSSTSPKTQTA 614
            .||   ||  ::|:::            |....:||    .||.|.....::  .|.|:|:....
Zfish   478 HEPLCKTP--RSLDRS------------DPHNNNGS----LSIQQMLGIAVL--ESLTNPRPVAC 522

  Fly   615 VVTKQQSQSMENLTPERSVAEE----PKNMRFPGSNGENYSVTQNQVLHIQKHTPLSVR---TRI 672
            ...|:..:     ||.:...|:    |::.:...:.|   |..:|..|.:....|:|.|   ..:
Zfish   523 NTHKKSGE-----TPSKLAHEDLFLLPQSRQRAATVG---SKQRNSTLILAVREPVSHRHPPPAL 579

  Fly   673 HDLEAHRADQLPQQPVWTSLTKLITQTSHL---GKSVSGSSSGNIDSRRDS-SCSDVFSSQVDSV 733
            |.|:   :..||::....:...|..|:||.   .|:.....|.::..:.|| ..|......::|.
Zfish   580 HVLD---SPLLPEERGGDTTPNLGAQSSHQVPEPKTDCVELSPDLPDQNDSYQVSQSLELCLESA 641

  Fly   734 FAKDEGEKRQRRKTHSWTESLGPSGGIVLDPTPQQQKQQSNAILRPRGTRQRELPSRHASWGSGD 798
            .:||||..              ||..     ||:.....             |.|:         
Zfish   642 VSKDEGNL--------------PSSS-----TPEADSPS-------------EAPA--------- 665

  Fly   799 NRCCLPQRTSSGSYYDSNRNTTAIFEGVIQDLKRSSNCNVIEGVAVAVEPIVGVGEGTVKRTKQK 863
                :|:..||    |.|.|..|      .||:.:.:|.                :.:|.|....
Zfish   666 ----VPELVSS----DDNNNPNA------ADLEAADDCT----------------DASVSRLSTD 700

  Fly   864 LEESTSLKKR--CQEESQELLLEAVDAGQRRCPSLYRSASSAHSPRQRQPLRCNS---------E 917
            ..:..|.:::  |..:...             |......::..||    |.||.|         |
Zfish   701 SIDFFSAREKFLCLSQDNH-------------PCSLSETTAVQSP----PARCTSPLDHPSEEPE 748

  Fly   918 ELMHTSDIENKNTT--PGDHEATVVLR-------------------VQGQTLADDQ--------- 952
            |..||...|:.:..  |..|::||.:|                   ...||...::         
Zfish   749 EECHTHSEEHSDAVLQPSAHDSTVSVRHIVTELESTSQTSSPPLAHTSPQTATPEEKEEEDEEAA 813

  Fly   953 --------RISGNVQ--------ILKQNFE-------------------------AKAGVVGTGG 976
                    |.||:|:        ||:|..|                         :.|....|..
Zfish   814 PAPHSLSDRPSGSVRRVTEQLELILRQGQEIPLSRSPLPSPCLGCTQSYSDEPEDSPALSQKTPQ 878

  Fly   977 GGGGGTAAGSGSSSTIAT----------SVSAVAGACSANPGKKTTSHQS--------------- 1016
            |.|..|.......|.|..          |||..|...:.||..:.:|..|               
Zfish   879 GKGDDTKVLDDEDSGIIPDPSFSVFLEGSVSLEADQITLNPTLEPSSCSSSLLWLEGVTELETDV 943

  Fly  1017 ----LPSSPVAQHANHVS-------------------AASNSNSSASNSSDSSVSENCDRNVKGL 1058
                .|...:|:.:..:.                   ..|......:.|||.|..:..:.....:
Zfish   944 DDPLRPQVRLARSSEDLQKIQETLRELQAFLYEAGGLGVSTGQVEENRSSDGSGEQRFEPKAPAV 1008

  Fly  1059 VHKYQTTTSCSSQAAATP------TVACAPLP---------------PAGTASNISHSCSTTTTT 1102
            ..:.....:...||..||      :.:.|.|.               ||.|  .:.|..|:.:| 
Zfish  1009 WQRAMEIEARIRQAGLTPPSLMKRSASLAKLDRLELSTNDLSDWDFHPAST--GLHHPSSSVST- 1070

  Fly  1103 SFKQRPLSYYDRSLSNRSTHDYSDS--------RPPPAPVRVSH---------SSNVQHQQQQQQ 1150
             |...||           ||.:.|:        :.|..|....|         |:::.....|:.
Zfish  1071 -FHSLPL-----------THSHDDAHKKQRVLPQSPSTPDSAVHLMDADRTEGSAHLLPSCPQKT 1123

  Fly  1151 QLQPEQHQQQVQIR-------RLAQHGKTHPLSRL--SAPKTGFNTAAYNTM 1193
            |:......:.|.|:       |..||.||||:.||  :..|....|..||||
Zfish  1124 QVGGASSPEHVPIQSTVSVSTRQQQHVKTHPVRRLRKAVDKKKTVTVLYNTM 1175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sshNP_733063.1 SSH-N 21..313 CDD:212166 101/278 (36%)
DEK_C 328..379 CDD:285919 26/50 (52%)
DSPc 385..519 CDD:238073 96/133 (72%)
ssh2aXP_005157728.1 SSH-N 12..245 CDD:212166 101/278 (36%)
DEK_C 260..311 CDD:285919 26/50 (52%)
DSPc 317..452 CDD:238073 96/134 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 200 1.000 Domainoid score I2983
eggNOG 1 0.900 - - E2759_KOG1716
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1576308at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25466
orthoMCL 1 0.900 - - OOG6_104189
Panther 1 1.100 - - LDO PTHR45864
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2281
SonicParanoid 1 1.000 - - X2719
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.810

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