DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment ssh and Dusp19

DIOPT Version :9

Sequence 1:	NP_733063.1	Gene:	ssh / 42986	FlyBaseID:	FBgn0029157	Length:	1193	Species:	Drosophila melanogaster
Sequence 2:	NP_001101209.2	Gene:	Dusp19 / 311151	RGDID:	1307457	Length:	220	Species:	Rattus norvegicus

Alignment Length:	167	Identity:	59/167 - (35%)
Similarity:	90/167 - (53%)	Gaps:	22/167 - (13%)

- Green bases have known domain annotations that are detailed below.

  Fly   354 GRLEEI-LDMDLGEYKSFIDAEMLVILGQMDAPTKIFEHVYLGSEWNASNLEELQKNGVRHILNV 417
            |.:::: ||:.:|..|.::      :||..||               |.:||.|:::.|.|||||
  Rat    54 GYVQDLTLDLQVGVIKPWL------LLGSQDA---------------AHDLELLRQHKVTHILNV 97

  Fly   418 TREIDNFFPGTFEYFNVRVYDDEKTNLLKYWDDTFRYITRAKAEGSKVLVHCKMGVSRSASVVIA 482
            ...::|.|...|.|..:.:.|..:||:|.|:.:.|.:|.:||.:...|||||..||||:|:|||.
  Rat    98 AYGVENVFLSEFTYKTISILDVPETNILSYFPECFEFIEQAKLKDGVVLVHCNAGVSRAAAVVIG 162

  Fly   483 YAMKAYQWEFQQALEHVKKRRSCIKPNKNFLNQLETY 519
            :.|.:.:..|..||..||:.|..|..|..|:.||.||
  Rat   163 FLMSSEELAFTNALSLVKEARPSICLNPGFMEQLRTY 199

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ssh	NP_733063.1	SSH-N	21..313	CDD:212166
		DEK_C	328..379	CDD:285919	5/25 (20%)
		DSPc	385..519	CDD:238073	48/133 (36%)
Dusp19	NP_001101209.2	DSPc	64..199	CDD:238073	54/155 (35%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG1716
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1576308at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.820