DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssh and Ssh1

DIOPT Version :9

Sequence 1:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster
Sequence 2:XP_038946124.1 Gene:Ssh1 / 304580 RGDID:1306038 Length:1040 Species:Rattus norvegicus


Alignment Length:1222 Identity:370/1222 - (30%)
Similarity:516/1222 - (42%) Gaps:330/1222 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 ESEDDEGNSKGNDRSECFFAGKGTALVLALKDIPPLTQSERRLSTDSTRSSNSTQSNNSDIQLHL 87
            |:..||........||.||..||.||.|           ::..|....||......:..|:..||
  Rat    25 EAGSDEDRKLNLSLSESFFMVKGAALFL-----------QQGNSPQGQRSLQHPHKHAGDLPQHL 78

  Fly    88 QSMFYLLQREDTLKMAVKLESQRSNRTRYLVIASRSCCRSGTSDRRRHRIMRHHSVKVGGSAGTK 152
            |.|..||:.||.:|:||:|||..::|.||:|:.    ..||..|                     
  Rat    79 QVMINLLRCEDRIKLAVRLESVWTDRVRYMVVV----YTSGRQD--------------------- 118

  Fly   153 SSTSPAVPTQRQLSVEQTATEASSKCDKTADKENATAAGDNKNTSGMEESCLLGIDCNER----T 213
                                                          .||:.|||:|.:.:    .
  Rat   119 ----------------------------------------------TEENILLGVDFSSKESKSC 137

  Fly   214 TIGLVVPILADTTIHLDGDGGFSVKVYEKTHIFKPVSVQAMWSALQTLHKVSKKARENNFYASGP 278
            |||:|:.:.:||.|||||||||||....:.||||||||||||||||.|||..:.||.:|::..|.
  Rat   138 TIGMVLRLWSDTKIHLDGDGGFSVSTAGRMHIFKPVSVQAMWSALQVLHKACEVARRHNYFPGGV 202

  Fly   279 SHDWLSSYERRIESDQSCLNEWNAMDALESRRPPSPDAIRNKPPEKEETESVIKMKLKAIMMSVD 343
            :..|.:.||..|.|:|||:||||||..|||.||.||....:||.|.|.||.:||.||::||||.|
  Rat   203 ALIWATYYESCISSEQSCINEWNAMQDLESTRPDS
PALFVDKPTEGERTERLIKAKLRSIMMSQD 267

  Fly   344 LDEVTSKYIRGRLEEILDMDLGEYKSFIDAEMLVILGQMDAPTKIFEHVYLGSEWNASNLEELQK 408
            |:.||||.||..||:.::.:|.|:|.|||.|||:||||||.|:.||:|:|||||||||||||||.
  Rat   268 LENVTSKEIRNELEKQMNCNLKEFKEFIDNEMLLIL
GQMDKPSLIFDHLYLGSEWNASNLEELQG 332

  Fly   409 NGVRHILNVTREIDNFFPGTFEYFNVRVYDDEKTNLLKYWDDTFRYITRAKAEGSKVLVHCKMGV 473
            :||.:||||||||||||||.|.|.|:||||:|.|:||.:|::.:::|.:||...||.||||||||
  Rat   333 SGVDYILNVTREIDNFFPGLFAYHNIRVYDEETTDLLAHWNEAYQFINKAKRNHSKCLVHCKMGV 397

  Fly   474 SRSASVVIAYAMKAYQWEFQQALEHVKKRRSCIKPNKNFLNQLETYSGMLDAMKNK-EKLQRSKS 537
            |||||.|||||||.:.|..::|..:||::||..:||..|:.||..|.|:|||.|.: .||.|.:.
  Rat   398 SRSASTVIAYAMKEFGWPLEKAFNYVKQKRSITRPNAGFMRQLSEYEGILDASKQRHNKLWRQQP 462

  Fly   538 --------------------ETNLKSTKDA------RLLPGSEPT----------PLIQALNQAK 566
                                :|.|...:||      |.||...|:          ||:       
  Rat   463 ADDTIAEPSEFLPETLDGALDTQLPCLEDATHPGLPRSLPSGGPSLPCCFRRLSDPLL------- 520

  Fly   567 SKSTGEAGVTP--DGEEEDGSRMHRRSIAQKSQRRMVRRSSSTSPKTQTAVVTKQQSQSMENLTP 629
                     .|  ||.   |..:|...:         .|.:....:.|...|.|....|.|.   
  Rat   521 ---------LPHRDGA---GGLVHLEDL---------ERDALLEDEAQPVEVRKLVPSSQEG--- 561

  Fly   630 ERSVAEEPK-NMRFPGSNGENYSVTQNQVLHIQKHTPLSVRTRIHDLEAHRADQLPQQPVW---- 689
            :|...::.| .:.|......:.|:.|                 :.:||   .|..|:...|    
  Rat   562 DRLCEKDVKRKLEFGSPKARSGSLPQ-----------------VEELE---KDGSPRPGRWRRAS 606

  Fly   690 TSLTKLITQTSHLGKSVSGSSSGNIDSRRDSSCSDVFSSQVDSVFAKDEGEKRQRRKTH-SWTES 753
            |.|.:.:....:|         .|.:|:|  ||.|.|  :.|:||    |...:.:..: |..:.
  Rat   607 TQLERGLLDQENL---------NNNNSKR--SCPDDF--ERDAVF----GILSKVKPPYTSCADC 654

  Fly   754 LGPSGGIVLDPTPQQQKQQSNAI-----LRPRGTRQRELPSRHASWGSGDNRCCLPQRTSSGSYY 813
            :.|:.|.......:.:...|:||     ..|..|..   |..|.|     ||...|:|.:||   
  Rat   655 MYPAAGAPEAFMERHEDPSSSAICTQPTFLPHVTSS---PMAHTS-----NRSRAPERPTSG--- 708

  Fly   814 DSNRNTTAIFEGVIQ-DLKRSSNCNVIEGVAVAVEPIVGVGEGTVKRTKQKLEESTSLK------ 871
            .:|.:...:..|..: |:..|       |..||.||...:.|.: :.|.:.|::|...|      
  Rat   709 PANTSPFLLPAGSRKPDVSGS-------GAGVAPEPPASLPEPS-RETSKALQKSLLSKNSHCDK 765

  Fly   872 ---------------KRCQEESQELLLEAVDAGQRRCPSLYRSASSAHSPRQRQPLRCNSEELM- 920
                           |:..:.|::|.|.....|::      .:|:|.....|...::.....|: 
  Rat   766 NAANTEAAAKEELSTKKDPKPSKDLRLLFSQEGEK------PTANSYLMQHQESIIQLQKAGLVR 824

  Fly   921 -HTSDIENKNTTPGDHEAT----VVLRVQGQTLADDQRISGNVQILKQNFEAKAGVVGTGGGGGG 980
             ||.::|...:.|.|..:|    ...|::.....:.|.                           
  Rat   825 KHTKELERLKSLPSDSPSTCRDSAASRLEASIPEEGQE--------------------------- 862

  Fly   981 GTAAGSGSSSTIATSVSAVAGACSANP----------GKKTTSHQSLPSSPVAQHANHVSAASNS 1035
              .|.....|...|....|.||...:|          ..|..|...|.|:......:.:|    |
  Rat   863 --PAHPALDSQAGTEEKPVGGASQKSPPPTLLLRLDHTSKDFSKDFLKSACYTPTPSSIS----S 921

  Fly  1036 NSSASNSSDSSVSENCDRNVKGLVHKYQTTTSCSSQAAATPTVACAPLPPAGTASNISHSCSTTT 1100
            |.:.|:||||..|.   |...|||.  |......::.........:||       ..|||.:...
  Rat   922 NLTRSSSSDSIHSV---RGKPGLVK--QRAQEIETRLRLAGLTVSSPL-------KRSHSLAKLG 974

  Fly  1101 TTSFKQRPLSYYDRSLSNRSTHDYSDSR------------PPPAPVRVSHSS 1140
            :.:|....||      |...|...:||:            |..||...|.:|
  Rat   975 SLNFSTEDLS------SEADTSTIADSQDAKCTLSSFLPEPQAAPRNPSATS 1020

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sshNP_733063.1 SSH-N 21..313 CDD:212166 102/293 (35%)
DEK_C 328..379 CDD:285919 28/50 (56%)
DSPc 385..519 CDD:238073 83/133 (62%)
Ssh1XP_038946124.1 SSH-N 3..237 CDD:212166 102/293 (35%)
DEK_C 251..303 CDD:400903 29/51 (57%)
PTP_DSP_cys 306..449 CDD:421693 88/142 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 198 1.000 Domainoid score I2987
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1576308at2759
OrthoFinder 1 1.000 - - FOG0002581
OrthoInspector 1 1.000 - - otm46075
orthoMCL 1 0.900 - - OOG6_104189
Panther 1 1.100 - - LDO PTHR45864
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2719
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.920

Return to query results.
Submit another query.