DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssh and Ssh2

DIOPT Version :9

Sequence 1:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster
Sequence 2:XP_006533290.1 Gene:Ssh2 / 237860 MGIID:2679255 Length:1450 Species:Mus musculus


Alignment Length:1409 Identity:403/1409 - (28%)
Similarity:572/1409 - (40%) Gaps:409/1409 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 DGESEDDEGNSKGNDRSECFFAGKGTALVLALKDIPPLTQSERRLSTDSTRSSNSTQSNNSDIQL 85
            :.:|.::|..|:....||.|...||.||.|           .|...:.:.|.|:....:..|:|.
Mouse    49 EADSGEEECRSQPRSISESFLTVKGAALFL-----------PRGNGSSTPRVSHRRNKHAGDLQQ 102

  Fly    86 HLQSMFYLLQREDTLKMAVKLESQRSNRTRYLVIASRSCCRSGTSDRRRHRIMRHHSVKVGGSAG 150
            |||:||.||:.||.:::||:|||...|||||:|:.|    .:|..|                   
Mouse   103 HLQAMFILLRPEDNIRLAVRLESTYQNRTRYMVVVS----TNGRQD------------------- 144

  Fly   151 TKSSTSPAVPTQRQLSVEQTATEASSKCDKTADKENATAAGDNKNTSGMEESCLLGIDCNER--- 212
                                                            .|||.:||:|.:..   
Mouse   145 ------------------------------------------------TEESIVLGMDFSSNDSS 161

  Fly   213 -TTIGLVVPILADTTIHLDGDGGFSVKVYEKTHIFKPVSVQAMWSALQTLHKVSKKARENNFYAS 276
             .|:|||:|:.:||.|||||||||||....:.||||||||||||||||:|||..:.||.:|:|..
Mouse   162 TCTMGLVLPLWSDTLIHLDGDGGFSVSTDNRVHIFKPVSVQAMWSALQSLHKACEVARMHNYYPG 226

  Fly   277 GPSHDWLSSYERRIESDQSCLNEWNAMDALESRRPPSPDAIRNKPPEKEETESVIKMKLKAIMMS 341
            .....|:|.||..|.||||.:||||||..::|.||.||....:.|.|:|.||.:||.||:.|||.
Mouse   227 SLFLTWVSYYESHINSDQSSVNEWNAMQDVQSHRPDSPALFTDIPTERERTERLIKTKLREIMMQ 291

  Fly   342 VDLDEVTSKYIRGRLEEILDMDLGEYKSFIDAEMLVILGQMDAPTKIFEHVYLGSEWNASNLEEL 406
            .||:.:|||.||..||..:..:|.|:|.|||.||:|||||||:||:|||||:|||||||||||:|
Mouse   292 KDLENITSKEIRTELEMQMVCNLREFKEFIDNEMIVILGQMDSPTQIFEHVFLGSEWNASNLEDL 356

  Fly   407 QKNGVRHILNVTREIDNFFPGTFEYFNVRVYDDEKTNLLKYWDDTFRYITRAKAEGSKVLVHCKM 471
            |..|||:||||||||||||||.|||.|:||||:|.|:||.||:||:::|::||..|||.||||||
Mouse   357 QNRGVRYILNVTREIDNFFPGVFEYHNIRVYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHCKM 421

  Fly   472 GVSRSASVVIAYAMKAYQWEFQQALEHVKKRRSCIKPNKNFLNQLETYSGMLDAMKNK-EKLQRS 535
            |||||||.|||||||.|.|...:|.::||:||:..|||.:|:.|||.|.|:|.|.|.: .||.||
Mouse   422 GVSRSASTVIAYAMKEYGWNLDRAYDYVKERRTVTKPNPSFMRQLEEYQGILLASKQRHNKLWRS 486

  Fly   536 KSETNLKSTKDARLLPGSE--PTPLIQALNQAKSKSTGE----------AGVTPDGEEEDGSRMH 588
            .|:::|....:....||.|  ...:..:.:|.....|.|          ..|.|....:.|....
Mouse   487 HSDSDLSDHHEPICKPGLELNKKEMTTSADQIAEVKTVENLAAMPTVFMEHVVPQDANQKGLHTK 551

  Fly   589 RRSIAQKSQRRMVRR---------------------SSSTSP----KTQTAVVTKQQSQSMENLT 628
            .|.|..:...:..|.                     |.|..|    ....|::...|:..:.|..
Mouse   552 ERVICLEFSSQEFRAGQIEDELNLNDINGCSSGCCLSESKLPLDNCHASKALLQPGQAPDIANKF 616

  Fly   629 PERSVAEEPKNMRFPGSNGENYSVTQNQVLHIQKHTPLSVRTRIHDLEAHRADQLPQQPVWTSLT 693
            |:.:|.:.           |..::..:..:|:.....|:.|.:          .||..|   .|.
Mouse   617 PDLAVEDL-----------ETDALKADMNVHLLPMEELTSRLK----------DLPMSP---DLE 657

  Fly   694 KLITQTSHLGKSVSGSSSGNIDSRRDSSCSDVFSSQVDSVFAKDEGEKRQRRKTHSWTESLGPSG 758
            ....|.| ...::|..|:..||          |.|.::. |.:...|.|.|..:||..|.||  |
Mouse   658 SPSPQAS-CQAAISDFSTDRID----------FFSALEK-FVELSQETRSRSFSHSRIEELG--G 708

  Fly   759 GIVLDPTPQQQKQQSNAILRPRGTRQRELPSRHASWGSGDNRCCLPQRT---SSGSYYDSNRNTT 820
            |                  |..|.|...:....:...:.|.|......|   |..|..|.:: :.
Mouse   709 G------------------RSEGCRLSVIEVAASEMAADDQRSSSLSNTPHASEESSVDEDQ-SK 754

  Fly   821 AIFEGVIQDL---KRSSNCNVIEGVAVAVEPI-VGVGEGTVKRTKQKLEESTSLKKRCQEESQ-- 879
            ||.|.|..|:   ..|.|...::.:...:|.| .|||:..:|        ...|...|....:  
Mouse   755 AITELVSPDIIMQSHSENAISVKEIVTEIESISQGVGQVQLK--------GDILSNPCHTPKKST 811

  Fly   880 --ELLLEAVDAGQRRCPSLY---RSASSAHSPRQRQPLRCNSEE---LMH--TSDIENKNTTPGD 934
              ||.||.|.|.:.: |..:   .|..|......|...:|..||   ..|  |:|:|.:....|:
Mouse   812 IHELPLERVPAPESK-PGHWEQDESFCSVQPELARDSGKCAPEEGCLTTHSSTADLEEEEPVEGE 875

  Fly   935 HE------------------ATVV----LRVQ---------GQTLADDQRISGNVQIL------- 961
            |:                  ||:.    ||.:         |.||::.:....:..:.       
Mouse   876 HDWGPGMHSGAKWCPGSVRRATLEFEERLRQEQENHGTASAGPTLSNRKNSKNDSSVADLMPKWK 940

  Fly   962 ------KQNFEAKAGVVGTGGGGGGGTAAGSGSSSTIATSVSAVAGACSANPGK---KTTSHQSL 1017
                  :.:|..|......|.|...|:.|||.|.             |..||..   :...|.||
Mouse   941 SDETTPEHSFFLKEAEPSKGKGKCSGSEAGSLSH-------------CERNPTMPDCELLEHHSL 992

  Fly  1018 PS------------------------------------------------SPVAQHANHVSAASN 1034
            |:                                                :|......|......
Mouse   993 PAPQDCLGSDSRSKKQEGDLKKQRAVVPNQECDTQAILLPLPKKIEIIEYTPTVTSLGHTEPGGE 1057

  Fly  1035 SNSSASNSS--------DSSVSENC--DRNVKGLVHKYQ------------TTTSCSSQA----- 1072
            :..|.....        :.|::..|  |.|:...:...|            :::.|...|     
Mouse  1058 ATPSKEGEKQGLRKVKMEQSITMFCALDENLNRTLEPSQVSLHPQVLPLPHSSSECDRPADPNPM 1122

  Fly  1073 ----------------AATPTVACAP----------LP------------PAGTASNIS------ 1093
                            .|.|.|:|:.          ||            .:.|.:.:|      
Mouse  1123 LSSPQDKGDCPSTPFKTAAPFVSCSTQGASFSLDYLLPHSVVHLEGCTEQSSATDNELSPEQASW 1187

  Fly  1094 -----HSCSTTTTTSFKQRPLSYYDRSLSNRSTHDYSDS--------RPPPAPVRVSHSSNVQH- 1144
                 |..|:.:..:....||:..|.||.|:    ..||        .|.|...|:.|||:.:: 
Mouse  1188 EDSRGHFLSSGSGMAHTSSPLTNEDLSLINK----LGDSVGVLQKKLDPSPEACRIPHSSSSENI 1248

  Fly  1145 QQQQQQQLQPEQHQQQVQIRRLAQHG--KTHPLSR-LSAPKTGF 1185
            :.....:...::|.::::.|.:.|.|  ||..:.| .|..|.|:
Mouse  1249 RDLSHSRGVVKEHAKEIESRVIFQAGFSKTSQMKRSASLAKLGY 1292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sshNP_733063.1 SSH-N 21..313 CDD:212166 104/295 (35%)
DEK_C 328..379 CDD:285919 26/50 (52%)
DSPc 385..519 CDD:238073 93/133 (70%)
Ssh2XP_006533290.1 SSH-N 40..263 CDD:212166 104/295 (35%)
DEK_C 277..329 CDD:370106 27/51 (53%)
DSP_slingshot_2 332..475 CDD:350417 98/142 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 218 1.000 Domainoid score I2650
eggNOG 1 0.900 - - E2759_KOG1716
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1576308at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm43985
orthoMCL 1 0.900 - - OOG6_104189
Panther 1 1.100 - - LDO PTHR45864
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2281
SonicParanoid 1 1.000 - - X2719
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.810

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