DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssh and Ssh2

DIOPT Version :10

Sequence 1:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster
Sequence 2:XP_006533290.1 Gene:Ssh2 / 237860 MGIID:2679255 Length:1450 Species:Mus musculus


Alignment Length:1409 Identity:403/1409 - (28%)
Similarity:572/1409 - (40%) Gaps:409/1409 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 DGESEDDEGNSKGNDRSECFFAGKGTALVLALKDIPPLTQSERRLSTDSTRSSNSTQSNNSDIQL 85
            :.:|.::|..|:....||.|...||.||.|           .|...:.:.|.|:....:..|:|.
Mouse    49 EADSGEEECRSQPRSISESFLTVKGAALFL-----------PRGNGSSTPRVSHRRNKHAGDLQQ 102

  Fly    86 HLQSMFYLLQREDTLKMAVKLESQRSNRTRYLVIASRSCCRSGTSDRRRHRIMRHHSVKVGGSAG 150
            |||:||.||:.||.:::||:|||...|||||:|:.|    .:|..|                   
Mouse   103 HLQAMFILLRPEDNIRLAVRLESTYQNRTRYMVVVS----TNGRQD------------------- 144

  Fly   151 TKSSTSPAVPTQRQLSVEQTATEASSKCDKTADKENATAAGDNKNTSGMEESCLLGIDCNER--- 212
                                                            .|||.:||:|.:..   
Mouse   145 ------------------------------------------------TEESIVLGMDFSSNDSS 161

  Fly   213 -TTIGLVVPILADTTIHLDGDGGFSVKVYEKTHIFKPVSVQAMWSALQTLHKVSKKARENNFYAS 276
             .|:|||:|:.:||.|||||||||||....:.||||||||||||||||:|||..:.||.:|:|..
Mouse   162 TCTMGLVLPLWSDTLIHLDGDGGFSVSTDNRVHIFKPVSVQAMWSALQSLHKACEVARMHNYYPG 226

  Fly   277 GPSHDWLSSYERRIESDQSCLNEWNAMDALESRRPPSPDAIRNKPPEKEETESVIKMKLKAIMMS 341
            .....|:|.||..|.||||.:||||||..::|.||.||....:.|.|:|.||.:||.||:.|||.
Mouse   227 SLFLTWVSYYESHINSDQSSVNEWNAMQDVQSHRPDSPALFTDIPTERERTERLIKTKLREIMMQ 291

  Fly   342 VDLDEVTSKYIRGRLEEILDMDLGEYKSFIDAEMLVILGQMDAPTKIFEHVYLGSEWNASNLEEL 406
            .||:.:|||.||..||..:..:|.|:|.|||.||:|||||||:||:|||||:|||||||||||:|
Mouse   292 KDLENITSKEIRTELEMQMVCNLREFKEFIDNEMIVILGQMDSPTQIFEHVFLGSEWNASNLEDL 356

  Fly   407 QKNGVRHILNVTREIDNFFPGTFEYFNVRVYDDEKTNLLKYWDDTFRYITRAKAEGSKVLVHCKM 471
            |..|||:||||||||||||||.|||.|:||||:|.|:||.||:||:::|::||..|||.||||||
Mouse   357 QNRGVRYILNVTREIDNFFPGVFEYHNIRVYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHCKM 421

  Fly   472 GVSRSASVVIAYAMKAYQWEFQQALEHVKKRRSCIKPNKNFLNQLETYSGMLDAMKNK-EKLQRS 535
            |||||||.|||||||.|.|...:|.::||:||:..|||.:|:.|||.|.|:|.|.|.: .||.||
Mouse   422 GVSRSASTVIAYAMKEYGWNLDRAYDYVKERRTVTKPNPSFMRQLEEYQGILLASKQRHNKLWRS 486

  Fly   536 KSETNLKSTKDARLLPGSE--PTPLIQALNQAKSKSTGE----------AGVTPDGEEEDGSRMH 588
            .|:::|....:....||.|  ...:..:.:|.....|.|          ..|.|....:.|....
Mouse   487 HSDSDLSDHHEPICKPGLELNKKEMTTSADQIAEVKTVENLAAMPTVFMEHVVPQDANQKGLHTK 551

  Fly   589 RRSIAQKSQRRMVRR---------------------SSSTSP----KTQTAVVTKQQSQSMENLT 628
            .|.|..:...:..|.                     |.|..|    ....|::...|:..:.|..
Mouse   552 ERVICLEFSSQEFRAGQIEDELNLNDINGCSSGCCLSESKLPLDNCHASKALLQPGQAPDIANKF 616

  Fly   629 PERSVAEEPKNMRFPGSNGENYSVTQNQVLHIQKHTPLSVRTRIHDLEAHRADQLPQQPVWTSLT 693
            |:.:|.:.           |..::..:..:|:.....|:.|.:          .||..|   .|.
Mouse   617 PDLAVEDL-----------ETDALKADMNVHLLPMEELTSRLK----------DLPMSP---DLE 657

  Fly   694 KLITQTSHLGKSVSGSSSGNIDSRRDSSCSDVFSSQVDSVFAKDEGEKRQRRKTHSWTESLGPSG 758
            ....|.| ...::|..|:..||          |.|.::. |.:...|.|.|..:||..|.||  |
Mouse   658 SPSPQAS-CQAAISDFSTDRID----------FFSALEK-FVELSQETRSRSFSHSRIEELG--G 708

  Fly   759 GIVLDPTPQQQKQQSNAILRPRGTRQRELPSRHASWGSGDNRCCLPQRT---SSGSYYDSNRNTT 820
            |                  |..|.|...:....:...:.|.|......|   |..|..|.:: :.
Mouse   709 G------------------RSEGCRLSVIEVAASEMAADDQRSSSLSNTPHASEESSVDEDQ-SK 754

  Fly   821 AIFEGVIQDL---KRSSNCNVIEGVAVAVEPI-VGVGEGTVKRTKQKLEESTSLKKRCQEESQ-- 879
            ||.|.|..|:   ..|.|...::.:...:|.| .|||:..:|        ...|...|....:  
Mouse   755 AITELVSPDIIMQSHSENAISVKEIVTEIESISQGVGQVQLK--------GDILSNPCHTPKKST 811

  Fly   880 --ELLLEAVDAGQRRCPSLY---RSASSAHSPRQRQPLRCNSEE---LMH--TSDIENKNTTPGD 934
              ||.||.|.|.:.: |..:   .|..|......|...:|..||   ..|  |:|:|.:....|:
Mouse   812 IHELPLERVPAPESK-PGHWEQDESFCSVQPELARDSGKCAPEEGCLTTHSSTADLEEEEPVEGE 875

  Fly   935 HE------------------ATVV----LRVQ---------GQTLADDQRISGNVQIL------- 961
            |:                  ||:.    ||.:         |.||::.:....:..:.       
Mouse   876 HDWGPGMHSGAKWCPGSVRRATLEFEERLRQEQENHGTASAGPTLSNRKNSKNDSSVADLMPKWK 940

  Fly   962 ------KQNFEAKAGVVGTGGGGGGGTAAGSGSSSTIATSVSAVAGACSANPGK---KTTSHQSL 1017
                  :.:|..|......|.|...|:.|||.|.             |..||..   :...|.||
Mouse   941 SDETTPEHSFFLKEAEPSKGKGKCSGSEAGSLSH-------------CERNPTMPDCELLEHHSL 992

  Fly  1018 PS------------------------------------------------SPVAQHANHVSAASN 1034
            |:                                                :|......|......
Mouse   993 PAPQDCLGSDSRSKKQEGDLKKQRAVVPNQECDTQAILLPLPKKIEIIEYTPTVTSLGHTEPGGE 1057

  Fly  1035 SNSSASNSS--------DSSVSENC--DRNVKGLVHKYQ------------TTTSCSSQA----- 1072
            :..|.....        :.|::..|  |.|:...:...|            :::.|...|     
Mouse  1058 ATPSKEGEKQGLRKVKMEQSITMFCALDENLNRTLEPSQVSLHPQVLPLPHSSSECDRPADPNPM 1122

  Fly  1073 ----------------AATPTVACAP----------LP------------PAGTASNIS------ 1093
                            .|.|.|:|:.          ||            .:.|.:.:|      
Mouse  1123 LSSPQDKGDCPSTPFKTAAPFVSCSTQGASFSLDYLLPHSVVHLEGCTEQSSATDNELSPEQASW 1187

  Fly  1094 -----HSCSTTTTTSFKQRPLSYYDRSLSNRSTHDYSDS--------RPPPAPVRVSHSSNVQH- 1144
                 |..|:.:..:....||:..|.||.|:    ..||        .|.|...|:.|||:.:: 
Mouse  1188 EDSRGHFLSSGSGMAHTSSPLTNEDLSLINK----LGDSVGVLQKKLDPSPEACRIPHSSSSENI 1248

  Fly  1145 QQQQQQQLQPEQHQQQVQIRRLAQHG--KTHPLSR-LSAPKTGF 1185
            :.....:...::|.::::.|.:.|.|  ||..:.| .|..|.|:
Mouse  1249 RDLSHSRGVVKEHAKEIESRVIFQAGFSKTSQMKRSASLAKLGY 1292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sshNP_733063.1 SSH-N 21..313 CDD:212166 104/295 (35%)
DEK_C 326..379 CDD:462592 27/52 (52%)
DSP_slingshot 385..523 CDD:350363 95/137 (69%)
Ssh2XP_006533290.1 SSH-N 40..263 CDD:212166 104/295 (35%)
DEK_C 277..329 CDD:462592 27/51 (53%)
DSP_slingshot_2 332..475 CDD:350417 98/142 (69%)

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