DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssh and C04F12.8

DIOPT Version :9

Sequence 1:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster
Sequence 2:NP_492580.2 Gene:C04F12.8 / 182228 WormBaseID:WBGene00007302 Length:272 Species:Caenorhabditis elegans


Alignment Length:280 Identity:73/280 - (26%)
Similarity:122/280 - (43%) Gaps:44/280 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   378 ILGQMDAPTKIFEHVYLGSEWNASNLEELQKNGVRHILNVTREIDNFFPGTFEYFNVRVYDDEKT 442
            :||||   ::|.:|:|| |.......:::::..:..|:|.|.|..:.:....:...:|:.|....
 Worm     7 VLGQM---SEINDHLYL-SGAGVLKPDKIKQRKINMIVNATTEEPSTYMQGVDTMKIRIEDHPYA 67

  Fly   443 NLLKYWDDTFRYITRAKAEGSKVLVHCKMGVSRSASVVIAYAMKAYQWEFQQALEHVKKRRSCIK 507
            .|.:::|.....|...|..|.|.||||..|||||||:|:.|.:|......:||..:||..|..|:
 Worm    68 RLSEHFDVVADKIRNVKERGGKTLVHCMAGVSRSASLVMIYLVKHEHMTLRQAYHYVKAARPIIR 132

  Fly   508 PNKNFLNQLETYSGMLDAMKNKEKLQRSKSETNLKSTKDARLLPGSE---PTPLIQA-------L 562
            ||..|..|:..|                  |..|:.|...:::...|   |.|.:.|       :
 Worm   133 PNVGFWKQMVDY------------------EKRLRGTASVKMVQTPECDMPIPDVYADDIRRMQI 179

  Fly   563 NQAKSK-STGEAGVTPDGEEEDGSRMHRRSIAQKSQ--RRMVRR--SSSTSPKTQTAVVTKQQSQ 622
            |:..|: |...|..:...:....:..:|.|::..|.  ...:||  |.|:.|.:..|:.|   |.
 Worm   180 NREISRHSLPSAQSSASKQRAFSASTYRPSVSSASSLATSSLRRAYSPSSLPASSLALTT---SY 241

  Fly   623 SMENLTPERSVAEEPKNMRF 642
            |:.:..|.|    :|:...|
 Worm   242 SLFSPAPTR----KPRQSLF 257

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
sshNP_733063.1 SSH-N 21..313 CDD:212166